CX296759

Overview
NameCX296759
Unique NameCX296759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H41_EMENI (Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.258e-32
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97          
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_CANGA (Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 9.487e-32
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97          
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_ARXAD (Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 9.487e-32
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            +LRDNIQGITKPAIRRLARRGGVKRIS LIYEETR VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISALIYEETRSVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97          
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_YEAST (Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.113e-31
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRT 97          
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H41_ASHGO (Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.113e-31
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYE+ R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEDVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97          
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H41_BLEJA (Histone H4-1 (Fragment) OS=Blepharisma japonicum PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.052e-30
Identity = 65/75 (86.67%), Postives = 73/75 (97.33%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 361
            V+R+NIQGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLENV+RDAVTYTEHARRKTVTA+DVVYALKRQG
Sbjct:   24 VIRENIQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLENVVRDAVTYTEHARRKTVTALDVVYALKRQG 98          
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H42_ASHGO (Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 8.879e-30
Identity = 65/76 (85.53%), Postives = 71/76 (93.42%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            +LRDNIQGITKPAI RLARRGGVKRISGLIYE+ R VLK  LE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAILRLARRGGVKRISGLIYEDVRAVLKSVLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97          
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_STYLE (Histone H4 OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.978e-29
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 2
Query:  143 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            L++ I GITKPAIRRLARRGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRT
Sbjct:   24 LKETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRT 98          
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_OXYNO (Histone H4 OS=Oxytricha nova PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.978e-29
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 2
Query:  143 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            L++ I GITKPAIRRLARRGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRT
Sbjct:   24 LKETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRT 98          
BLAST of CX296759 vs. ExPASy Swiss-Prot
Match: H4_EUPCR (Histone H4 OS=Euplotes crassus PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.675e-28
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 2
Query:  143 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 367
            LR+ I G+TKPAIRRLARRGGVKRIS L+YEETR VLK FLE+VIRD+VTYTEHA+RKTVTA+DVVYALKRQG+T
Sbjct:   27 LRETILGVTKPAIRRLARRGGVKRISSLVYEETRAVLKGFLESVIRDSVTYTEHAKRKTVTALDVVYALKRQGKT 101          
The following BLAST results are available for this feature:
BLAST of CX296759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H41_EMENI4.258e-3289.47Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 S... [more]
H4_CANGA9.487e-3289.47Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3[more]
H4_ARXAD9.487e-3289.47Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 S... [more]
H4_YEAST2.113e-3188.16Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=... [more]
H41_ASHGO2.113e-3188.16Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3[more]
H41_BLEJA3.052e-3086.67Histone H4-1 (Fragment) OS=Blepharisma japonicum P... [more]
H42_ASHGO8.879e-3085.53Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3[more]
H4_STYLE1.978e-2985.33Histone H4 OS=Stylonychia lemnae PE=3 SV=2[more]
H4_OXYNO1.978e-2985.33Histone H4 OS=Oxytricha nova PE=3 SV=2[more]
H4_EUPCR1.675e-2882.67Histone H4 OS=Euplotes crassus PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC05802E04SK FerrChloL1 Citrus clementina cDNA clone C05802E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296759 ID=CX296759; Name=CX296759; organism=Citrus clementina; type=EST; length=638bp
CGAGGAGTGCCGGAAAAAGAAAGAAAATTCCCAATTAGTTTGAAAACCGT
AATTAGCATTTTAATTTCGTAGCAGAATGTCTGGACGCGGCAAGGGAGGC
AAGGGATTGGGGAAGGGAGGAGCCAAGAGGCATCGCAAGGTGTTGCGTGA
TAACATTCAGGGCATCACCAAGCCGGCTATTCGCCGTTTGGCCAGAAGAG
GAGGCGTTAAGAGAATCAGCGGTCTCATCTACGAGGAGACACGCGGCGTC
CTCAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGA
GCACGCTCGCCGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGCTTTGGTGGTTGATGTGGCGTCGTT
TTGTATTTTGTGTTTTAGGGTTTTCCTTTTTTCCTGTAAACCAGTGAACG
TGGTTGTGTCTAGCGAGTGGGTTTAAATTGGAGGCAACTTGTATTTGCCG
TTTCCTAGGGGTTTTTTTATTTTTTTGGTTCATTGGTGTTTTCATCTTTT
GCAATGAGAATCTAGATGTTTGCTAAAACCTCGTGCCGAATTCGGCACGA
GGCCTCGTGCCGAATTCGGCACGAAGGGGGGGCCCGGT
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