CX296765

Overview
NameCX296765
Unique NameCX296765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 58/155 (37.42%), Postives = 88/155 (56.77%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 457
            +A  +AP+ VF+DEIDA+  +    ++  +   + T   L+ QLDG   R  V           I ATNR + LD   +RPGRIDR++   LPD K + +IF +H++   LAEDVN  EL+      SGADI+ +  E+G+M++R+   K+  +D
Sbjct:  272 VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK---------VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 417          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 59/161 (36.65%), Postives = 89/161 (55.28%), Query Frame = 2
Query:   20 APAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLE 490
            +P+ VF+DEIDA+  +    H+  +   + T   L+ QLDG   R  V           I ATNR + LD   +RPGRIDR++   LPD K R +IF +H++   L+EDVN EE V     FSGADI+ +  E+G++++R+   K+   D     +K + +
Sbjct:  281 SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVK---------VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFK 432          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 69/222 (31.08%), Postives = 112/222 (50.45%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIA----GRHAR-KDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQ--LAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPG 652
            A++ +P+ +F+DEIDA+A    GR+    +  R  T   L+ ++DG              AVI + ATNR D LD    RPGR DR + +  PD   R  I  VH + K+  L +DV+  ++   T GF+GAD+ NLVNE+ +++ R     +++ D +  +++ +    G+       +K    +   +K ++A HE GH V+          A + LLPG
Sbjct:  434 AKKESPSIIFIDEIDAVAKSRDGRYRIVSNDEREQTLNQLLTEMDG---------FDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESILKVHVSRKELPLGKDVDLSDIAAMTTGFTGADLANLVNEAALLAGRSNKEIVEKIDFICAVERSI---AGI-------EKKHAKLKGNEKAVVARHEVGHAVVG--------TAVANLLPG 628          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 63/201 (31.34%), Postives = 104/201 (51.74%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHAR--KDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAH 604
            A+ NAP  +F+DE+D++ G+       P  R T   L+A++DG K   GV         I I ATN P+ LD   +RPGR D ++ +  PD K R +I   +    +  + V+ E +   TVGFSGA++ NLVN++ + +   G   +  +++    DK        +L   E++  E  +  + K + A HE+GH ++A+
Sbjct:  369 AKANAPCVIFIDELDSVGGKRIEFPMHPYSRQTIIQLLAEMDGFKPNEGV---------IIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDK--------ILMGPERRSVE--IDNKNKTITAYHESGHAIIAY 550          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 62/204 (30.39%), Postives = 107/204 (52.45%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHAR-----KDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVL 598
            AR  AP  V++DEIDA+  + +       +     T   L+ ++DG         +     VI + +TNR D LD   +RPGR+DR ++I LP  ++R +IF+ H    +L +   F  + L   T GFSGADI N+ NE+ + + R+GH+ +   +    +++ +L G           K  + +S E+++++A HE+GH ++
Sbjct:  397 ARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG---------MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVER-VLAGTA---------KKSKILSKEEQKVVAFHESGHALV 581          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.014e-21
Identity = 58/161 (36.02%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            AR + P  +F+DEIDAI GR   +    D   + T   L+ QLDG       D +     V  I ATNRPD LD   +RPGR+DR++ I LP+ + R+ I  +H+AG     ++++E +V    GF+GAD+RN+  E+G+ ++R     +  +D +  + K
Sbjct:  228 AREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG------FDNLG---KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRK 379          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 57/161 (35.40%), Postives = 92/161 (57.14%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            AR + P  +F+DEIDAI GR   +    D   + T   L+ QLDG       D++     V  I ATNRPD LD   +RPGR+DR++ I LP+ + R++I  +H++G     ++++E +V    GF+GAD+RN+  E+G+ ++R     +  +D +  + K
Sbjct:  228 AREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG------FDQLG---KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRK 379          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 58/161 (36.02%), Postives = 89/161 (55.28%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            A+ + P  +F+DE+DAI GR   +    D   + T   L+ Q+DG  +  G  +I        I ATNRPD LD   +RPGR+DR++ I LP+   R++IF +H+A  +   + +FE  V  + GF+GADIRN   E+G  ++R     I   D++  + K
Sbjct:  270 AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF-DNLGQTKI--------IMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 53/168 (31.55%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 508
            A +N+PA +F+DEID+IA +  + +    R     L+  +DG K R+ V         + + ATNRP+ +D    R GR DR + +G+PD   R++I  +H+   +LA+DV+ E++   T G+ G+D+ +L +E+ +  +R+    I   +  D +D ++L+ +GV +
Sbjct:  313 AEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNV---------VVMAATNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDE--DEIDAEVLDSLGVTM 469          

HSP 2 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 48/143 (33.57%), Postives = 76/143 (53.15%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIA---GRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVR 427
            AR  AP  VF+DE+D+IA   G  A            L+ ++DG         ++ ++ V  I ATNRPD++D   +RPGR+D+ +Y+ LPD + R  I         +AEDV+   +   T GFSGAD+  +V  +  ++++
Sbjct:  586 ARAAAPCVVFLDELDSIAKARGASAGDSGGGDRVVNQLLTEMDG---------VNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIK 719          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: CDC48_EMENI (Cell division control protein 48 OS=Emericella nidulans GN=cdc48 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.553e-21
Identity = 54/168 (32.14%), Postives = 94/168 (55.95%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 508
            A +N+PA +F+DEID+IA +  + +    R     L+  +DG K R+ V         + + ATNRP+ +D    R GR DR + IG+PD   R++I  +H+   +L EDV+ E +   T G+ G+D+ +L +E+ +  +R+    I   +  D +D ++L+ +GV +
Sbjct:  318 AEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNV---------VVMAATNRPNSIDPALRRFGRFDREVDIGIPDPTGRLEILSIHTKNMKLGEDVDLETIAAETHGYVGSDLASLCSEAAMQQIREKMDLIDLDE--DTIDAEVLDSLGVTM 474          

HSP 2 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSV 544
            AR  AP  VF+DE+D+IA              + ++ QL      T +D ++ ++ V  I ATNRP++LD   VRPGR+D  +Y+ LPD   R  I         +A DV+ E +  +T GFSGAD+       G ++ R     I++    ++  ++  E  G  +  E++++ E  V
Sbjct:  592 ARAAAPCVVFLDELDSIAKSRGGSVGDAGGASDRVVNQL-----LTEMDGMTSKKNVFVIGATNRPEQLDAALVRPGRLDTLVYVPLPDQASREGILKAQLRKTPVASDVDIEFIASKTHGFSGADL-------GFVTQRAVKLAIKESISAEIERQKQREAAGEDVKMEDEEEGEDPV 758          
The following BLAST results are available for this feature:
BLAST of CX296765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
PRS4_DROME3.839e-2137.4226S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4A_ARATH3.839e-2136.6526S proteasome regulatory subunit 4 homolog A OS=A... [more]
FTSH7_ORYSJ3.839e-2131.08Cell division protease ftsH homolog 7, chloroplast... [more]
YMEL1_RAT5.014e-2131.34ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
SPG7_HUMAN5.014e-2130.39Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
PS10A_ARATH5.014e-2136.0226S protease regulatory subunit 10B homolog A OS=A... [more]
PS10B_ARATH8.553e-2135.4026S protease regulatory subunit S10B homolog B OS=... [more]
PRS10_YEAST8.553e-2136.0226S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
CDC48_SCHPO8.553e-2131.55Cell division cycle protein 48 OS=Schizosaccharomy... [more]
CDC48_EMENI8.553e-2132.14Cell division control protein 48 OS=Emericella nid... [more]

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Properties
Property NameValue
Genbank descriptionC05802E10SK FerrChloL1 Citrus clementina cDNA clone C05802E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296765 ID=CX296765; Name=CX296765; organism=Citrus clementina; type=EST; length=684bp
TTCCATTGCAAGGAGAAACGCACCTGCTTTTGTATTTGTGGATGAAATTG
ATGCTATTGCTGGAAGGCATGCCAGAAAGGATCCACGAAGAAGGGCAACA
TTTGAGGCTCTAATTGCACAACTTGACGGGGACAAGGAAAGAACTGGTGT
TGATCGGATTTCACTTAGACAAGCTGTCATATTCATCTGCGCTACCAATA
GGCCAGATGAATTGGACCTTGAGTTTGTCCGCCCTGGACGTATTGACCGC
CGTTTATACATTGGTTTGCCTGATGCAAAGCAACGAGTGCAAATATTTGA
TGTGCACAGTGCAGGAAAGCAACTTGCAGAAGATGTAAACTTTGAAGAGC
TTGTCTTCCGTACAGTTGGTTTTTCTGGGGCAGATATTAGAAATCTTGTG
AATGAATCAGGAATAATGTCGGTGAGAAAAGGACATTCCAAAATCCAGCA
ACAAGACATTGTTGATGTGCTAGATAAACAATTGCTTGAGGGTATGGGTG
TACTTCTTACAGAAGAAGAGCAACAGAAATGTGAACAAAGTGTTTCTTTT
GAAAAAAAGAGGCTCTTGGCTGTACATGAAGCTGGGCACATAGTATTAGC
TCACCTTTTTCCTCGATTTGATTGGCATGCATTTTCTCAGCTCCTACCTG
GTGGCAAGGAAAACTGCATATCTGTGTTCTATCC
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