CX296765

Overview
NameCX296765
Unique NameCX296765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 57/165 (34.55%), Postives = 95/165 (57.58%), Query Frame = 2
Query:   14 RNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 508
            +N+PA +F+DEIDAIA    +++       + +++QL      T +D +  R  V+ I ATNRP+ +D    R GR DR + IG+PDA  R++I  +H+   +L EDV+ E++     GF GAD+ +L +E+ I  +R+    I  +D  D +D ++L  + V +
Sbjct:  300 KNSPAILFIDEIDAIA---PKREKAHGEVEKRIVSQL-----LTLMDGLKTRAHVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLGEDVDLEQVANECHGFVGADLASLCSEAAIQQIREKMELIDLED--DTIDAEVLNSLAVTM 454          

HSP 2 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 55/171 (32.16%), Postives = 88/171 (51.46%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEE 520
            AR  AP  +F DE+D+IA              + +I Q+      T +D ++ ++ V  I ATNRPD +D   +RPGR+D+ +YI LPD   R+QIF        L+ D++   L   TVGFSGAD+  +   +  +++R+      +++I    ++Q     G  L E+E
Sbjct:  571 ARAAAPCVLFFDELDSIAKARGGSVGDAGGAADRVINQV-----LTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVGFSGADLTEICQRACKLAIRES----IEREIRQEKERQDRSARGEELMEDE 732          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.117e-20
Identity = 64/203 (31.53%), Postives = 106/203 (52.22%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVL 598
            AR+ AP+ +F+DEIDAI     R     +  R +T   L+ ++DG     GV         + +  TNRPD LD   +RPGR DR++ I  PD K R QIF ++    +L  + ++  + L   T GF+GADI N+ NE+ +++ R   + +        +D+ ++ G+         +K  + +S  ++R +A HE+GH V+
Sbjct:  410 ARQAAPSIIFIDEIDAIGRARGRGGLGGNDERESTLNQLLVEMDGFGTTAGV---------VVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFESAIDR-VIGGL---------EKKNRVISKLERRTVAYHESGHAVV 593          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: YME1_YEAST (Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 65/201 (32.34%), Postives = 100/201 (49.75%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLL--EGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLA 601
            AR  APA +F+DE+DAI G+   KD    + T   L+ +LDG  + +G+         I I ATN P+ LD    RPGR D+ + + LPD + R  I   H     LA++V+   +   T G SGA++ NLVN++ + + +K    +         DK L+  E   ++LT+              ++  A HEAGH ++A
Sbjct:  369 ARSRAPAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQTSGI---------IIIGATNFPEALDKALTRPGRFDKVVNVDLPDVRGRADILKHHMKKITLADNVDPTIIARGTPGLSGAELANLVNQAAVYACQKNAVSVDMSHFEWAKDKILMGAERKTMVLTD------------AARKATAFHEAGHAIMA 548          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 68/204 (33.33%), Postives = 107/204 (52.45%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIA-----GRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFE---ELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIV 595
            AR NAP+ VF+DEIDAI      G  +  +  R  T   ++ ++DG    T  D       V+ +  TNRPD LD   +RPGR DR + I  P+ + R  IF VH    +LA ++ F+    L   T GFSGADI N+ NE+ +++ R     ++       +++ ++ G+         ++  + +S E+K+++A HEAGH V
Sbjct:  436 ARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMDGF---TPADH------VVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEI-FDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIER-VIGGV---------ERKSKLLSPEEKKVVAYHEAGHAV 619          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 57/162 (35.19%), Postives = 84/162 (51.85%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +AR      +F DE+DAI G      A  D   + T   LI QLDG   R  +           + ATNRPD LD   +RPGR+DR++  GLPD + R  IF +H+     A D+ FE L       +GADIR++  E+G+ ++R     + ++D ++ +DK
Sbjct:  258 MARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK---------VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDK 410          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = 2
Query:   20 APAFVFVDEIDAIAGRH--ARKDPRR--RATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLE 490
            +P+ VF+DEIDA+  +   A     R  + T   L+ QLDG   R  V           I ATNR + LD   +RPGRIDR++   LPD K R +IF +H++   LAEDVN EE V     FSGADI+ +  E+G++++R+   K+   D     +K + +
Sbjct:  281 SPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVK---------VILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFK 432          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.459e-20
Identity = 55/161 (34.16%), Postives = 89/161 (55.28%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            AR + P  +F+DEIDAI GR   +    D   + T   L+ Q+DG               V  I ATNRPD LD   +RPGR+DR+++I LP+ + R+ I  +H+       ++++E +V  + GF+GAD+ N+  E+G+ ++R  H  + Q+D +  + K
Sbjct:  222 ARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG---------FDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRK 373          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: TERA_XENTR (Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 55/170 (32.35%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 514
            A +NAPA +F+DE+DAIA +  +      R     L+  +DG K+R  V         I + ATNRP+ +D    R GR DR + IG+PD+  R++I  +H+   +L++DV+ E++   T G  GAD+  L +E+ + ++RK    I  +D  + +D +++  + V + +
Sbjct:  293 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV---------IVMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451          

HSP 2 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 49/141 (34.75%), Postives = 78/141 (55.32%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 430
            AR+ AP  +F DE+D+IA              + +I Q+      T +D +S ++ V  I ATNRPD +D   +RPGR+D+ +YI LPD K R+ I   +     +A+DV+ + L   T GFSGAD+  +   +  +++R+
Sbjct:  566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQI-----LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRKSPVAKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRE 701          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 55/170 (32.35%), Postives = 95/170 (55.88%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 514
            A +NAPA +F+DE+DAIA +  +      R     L+  +DG K+R  V         I + ATNRP+ +D    R GR DR + IG+PD+  R++I  +H+   +L++DV+ E++   T G  GAD+  L +E+ + ++RK    I  +D  + +D +++  + V + +
Sbjct:  293 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV---------IVMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED--ETIDAEVMNSLAVTMDD 451          

HSP 2 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 49/141 (34.75%), Postives = 79/141 (56.03%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRK 430
            AR+ AP  +F DE+D+IA              + +I Q+      T +D +S+++ V  I ATNRPD +D   +RPGR+D+ +YI LPD K R+ I   +     +A+DV+ + L   T GFSGAD+  +   +  +++R+
Sbjct:  566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQI-----LTEMDGMSIKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRKSPVAKDVDVDFLAKMTNGFSGADLTEICQRACKLAIRE 701          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.905e-20
Identity = 57/162 (35.19%), Postives = 87/162 (53.70%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +A+  AP+ +F+DEIDAIA +        D   + T   L+A++DG            R  V  I ATNRPD LD   +RPGR DR + +  PD K R++I  +H+    LAEDVN EE+   T G  GA+++ +  E+G+ ++R+    +   D    ++K
Sbjct:  258 LAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG---------FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 410          
The following BLAST results are available for this feature:
BLAST of CX296765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
TERA2_CAEEL1.117e-2034.55Transitional endoplasmic reticulum ATPase homolog ... [more]
FTSH3_ARATH1.117e-2031.53Cell division protease ftsH homolog 3, mitochondri... [more]
YME1_YEAST1.459e-2032.34Protein YME1 OS=Saccharomyces cerevisiae GN=YME1 P... [more]
RCA1_YEAST1.459e-2033.33Mitochondrial respiratory chain complexes assembly... [more]
PRS7_DICDI1.459e-2035.1926S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS4B_ARATH1.459e-2037.8926S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS10_BOVIN1.459e-2034.1626S protease regulatory subunit S10B OS=Bos taurus... [more]
TERA_XENTR1.905e-2032.35Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_XENLA1.905e-2032.35Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
PSMR_METJA1.905e-2035.19Proteasome-activating nucleotidase OS=Methanocaldo... [more]

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Properties
Property NameValue
Genbank descriptionC05802E10SK FerrChloL1 Citrus clementina cDNA clone C05802E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296765 ID=CX296765; Name=CX296765; organism=Citrus clementina; type=EST; length=684bp
TTCCATTGCAAGGAGAAACGCACCTGCTTTTGTATTTGTGGATGAAATTG
ATGCTATTGCTGGAAGGCATGCCAGAAAGGATCCACGAAGAAGGGCAACA
TTTGAGGCTCTAATTGCACAACTTGACGGGGACAAGGAAAGAACTGGTGT
TGATCGGATTTCACTTAGACAAGCTGTCATATTCATCTGCGCTACCAATA
GGCCAGATGAATTGGACCTTGAGTTTGTCCGCCCTGGACGTATTGACCGC
CGTTTATACATTGGTTTGCCTGATGCAAAGCAACGAGTGCAAATATTTGA
TGTGCACAGTGCAGGAAAGCAACTTGCAGAAGATGTAAACTTTGAAGAGC
TTGTCTTCCGTACAGTTGGTTTTTCTGGGGCAGATATTAGAAATCTTGTG
AATGAATCAGGAATAATGTCGGTGAGAAAAGGACATTCCAAAATCCAGCA
ACAAGACATTGTTGATGTGCTAGATAAACAATTGCTTGAGGGTATGGGTG
TACTTCTTACAGAAGAAGAGCAACAGAAATGTGAACAAAGTGTTTCTTTT
GAAAAAAAGAGGCTCTTGGCTGTACATGAAGCTGGGCACATAGTATTAGC
TCACCTTTTTCCTCGATTTGATTGGCATGCATTTTCTCAGCTCCTACCTG
GTGGCAAGGAAAACTGCATATCTGTGTTCTATCC
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