CX296765

Overview
NameCX296765
Unique NameCX296765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 493
            +A +  PA +F+DEIDA+A +        D   + T   L++++DG  ER  +           I ATNR D LD   +RPGR DR + +  P+   R +I ++H+    +A+ V+F +L   T  FSGA + +L  E+G+ ++R    ++ +QD  D  +K + EG
Sbjct:  240 LAEQKDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIR---------IIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFSDLAADTAEFSGAQLASLATEAGMFAIRDDRDEVHRQDFDDAYEKLVAEG 397          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 457
            +A  +AP+ VF+DEIDAI  +    ++  +   + T   L+ QLDG   R  V           I ATNR + LD   +RPGRIDR++   LPD K + +IF +H++   LA+DV  ++L+      SGADI+ +  E+G+M++R+   K+  +D
Sbjct:  273 VAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK---------VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 457
            +A  +AP+ VF+DEIDAI  +    ++  +   + T   L+ QLDG   R  V           I ATNR + LD   +RPGRIDR++   LPD K + +IF +H++   LA+DV  ++L+      SGADI+ +  E+G+M++R+   K+  +D
Sbjct:  273 VAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK---------VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 457
            +A  +AP+ VF+DEIDAI  +    ++  +   + T   L+ QLDG   R  V           I ATNR + LD   +RPGRIDR++   LPD K + +IF +H++   LA+DV  ++L+      SGADI+ +  E+G+M++R+   K+  +D
Sbjct:  273 VAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK---------VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 60/161 (37.27%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            AR + P  VF+DEIDAI GR   +    D   + T   L+ QLDG       D +     V  I ATNRPD LD   +RPGR+DR++ IGLP+ + R++I  +HS       +++FE +V  + GFS AD+RN+  E+G+ ++R     +  +D +  + K
Sbjct:  239 ARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG------FDSLG---KVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRK 390          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 64/203 (31.53%), Postives = 105/203 (51.72%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIV 595
            AR+ AP+ +F+DEIDAI     R      +  R +T   L+ ++DG     GV         + +  TNRPD LD   +RPGR DR++ I  PD K R QIF ++    +L  + ++  + L   T GF+GADI N+ NE+ +++ R   + +        +D+ ++ G+         +K  + +S  ++R +A HE+GH V
Sbjct:  415 ARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGV---------VVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFDSAIDR-VIGGL---------EKKNRVISKLERRTVAYHESGHAV 598          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 56/166 (33.73%), Postives = 93/166 (56.02%), Query Frame = 2
Query:   14 RNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 508
            +N PA +F+DEIDAIA +  + +    R     L+  +DG K R+ +         + I ATNRP+ +D    R GR DR + IG+PDA  R++I  +H+   +LA+DV+ E++     GF GAD+ +L +E+ +  +R+    I  +D  D +D ++L  + V +
Sbjct:  301 KNQPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNL---------VVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQIREKMELIDLED--DQIDAEVLNSLAVTM 455          

HSP 2 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIA-GRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSK 442
            AR  AP  +F DE+D+IA  R            + +I Q+      T +D ++ ++ V  I ATNRPD +D   +RPGR+D+ +YI LPD   R QI         L++D++   L   TVGFSGAD+  +   +  +++R+   K
Sbjct:  572 ARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQV-----LTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSGADLTEICQRACKLAIRESIEK 712          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 58/167 (34.73%), Postives = 89/167 (53.29%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLE 490
            +A++ AP+ +F+DEIDAI G H        D   + T   L+A++DG   R  V           + ATNR D LD   +RPGR DR + I LPD + R+ I  +H+    + EDVN  E+   T G +GAD+R +  E+G+ ++R     +  +D +  +DK  L+
Sbjct:  241 LAKQRAPSIIFIDEIDAI-GAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVK---------IVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIRMERDAVNSEDFMKAIDKLALD 397          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 59/162 (36.42%), Postives = 87/162 (53.70%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +A+  AP+ VF+DEIDAI           D   + T   L+A +DG + R  V  I          ATNR D LD   +RPGR DR + I LPD + R  I  VH+    L+EDV+  E+   T G +GA++  +  E+G+ ++RK H ++ Q+D +  L+K
Sbjct:  241 LAKEKAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIG---------ATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDFLTALNK 393          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 56/155 (36.13%), Postives = 87/155 (56.13%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 457
            +A  + P+ VF+DEIDAI  +    ++  +   + T   L+ QLDG   R  V           I ATNR + LD   +RPGRIDR++   LPD K + +IF +H++   LA+DV  +EL+      SGADI+ +  E+G+M++R+   K+  +D
Sbjct:  273 VAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK---------VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418          
The following BLAST results are available for this feature:
BLAST of CX296765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
PSMR1_HALSA2.489e-2032.34Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS4_RAT2.489e-2036.1326S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE2.489e-2036.1326S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN2.489e-2036.1326S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS10_CAEEL2.489e-2037.27Probable 26S protease regulatory subunit S10B OS=C... [more]
FTSHA_ARATH2.489e-2031.53Cell division protease ftsH homolog 10, mitochondr... [more]
TERA1_CAEEL3.250e-2033.73Transitional endoplasmic reticulum ATPase homolog ... [more]
PSMR_METMJ3.250e-2034.73Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METHJ3.250e-2036.42Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS4_CHICK3.250e-2036.1326S protease regulatory subunit 4 OS=Gallus gallus... [more]

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Properties
Property NameValue
Genbank descriptionC05802E10SK FerrChloL1 Citrus clementina cDNA clone C05802E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296765 ID=CX296765; Name=CX296765; organism=Citrus clementina; type=EST; length=684bp
TTCCATTGCAAGGAGAAACGCACCTGCTTTTGTATTTGTGGATGAAATTG
ATGCTATTGCTGGAAGGCATGCCAGAAAGGATCCACGAAGAAGGGCAACA
TTTGAGGCTCTAATTGCACAACTTGACGGGGACAAGGAAAGAACTGGTGT
TGATCGGATTTCACTTAGACAAGCTGTCATATTCATCTGCGCTACCAATA
GGCCAGATGAATTGGACCTTGAGTTTGTCCGCCCTGGACGTATTGACCGC
CGTTTATACATTGGTTTGCCTGATGCAAAGCAACGAGTGCAAATATTTGA
TGTGCACAGTGCAGGAAAGCAACTTGCAGAAGATGTAAACTTTGAAGAGC
TTGTCTTCCGTACAGTTGGTTTTTCTGGGGCAGATATTAGAAATCTTGTG
AATGAATCAGGAATAATGTCGGTGAGAAAAGGACATTCCAAAATCCAGCA
ACAAGACATTGTTGATGTGCTAGATAAACAATTGCTTGAGGGTATGGGTG
TACTTCTTACAGAAGAAGAGCAACAGAAATGTGAACAAAGTGTTTCTTTT
GAAAAAAAGAGGCTCTTGGCTGTACATGAAGCTGGGCACATAGTATTAGC
TCACCTTTTTCCTCGATTTGATTGGCATGCATTTTCTCAGCTCCTACCTG
GTGGCAAGGAAAACTGCATATCTGTGTTCTATCC
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