CX296765
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 54/167 (32.34%), Postives = 89/167 (53.29%), Query Frame = 2 Query: 5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEG 493 +A + PA +F+DEIDA+A + D + T L++++DG ER + I ATNR D LD +RPGR DR + + P+ R +I ++H+ +A+ V+F +L T FSGA + +L E+G+ ++R ++ +QD D +K + EG Sbjct: 240 LAEQKDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIR---------IIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFSDLAADTAEFSGAQLASLATEAGMFAIRDDRDEVHRQDFDDAYEKLVAEG 397
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 2 Query: 5 IARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 457 +A +AP+ VF+DEIDAI + ++ + + T L+ QLDG R V I ATNR + LD +RPGRIDR++ LPD K + +IF +H++ LA+DV ++L+ SGADI+ + E+G+M++R+ K+ +D Sbjct: 273 VAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK---------VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 2 Query: 5 IARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 457 +A +AP+ VF+DEIDAI + ++ + + T L+ QLDG R V I ATNR + LD +RPGRIDR++ LPD K + +IF +H++ LA+DV ++L+ SGADI+ + E+G+M++R+ K+ +D Sbjct: 273 VAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK---------VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 2 Query: 5 IARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 457 +A +AP+ VF+DEIDAI + ++ + + T L+ QLDG R V I ATNR + LD +RPGRIDR++ LPD K + +IF +H++ LA+DV ++L+ SGADI+ + E+G+M++R+ K+ +D Sbjct: 273 VAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK---------VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 60/161 (37.27%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 8 ARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478 AR + P VF+DEIDAI GR + D + T L+ QLDG D + V I ATNRPD LD +RPGR+DR++ IGLP+ + R++I +HS +++FE +V + GFS AD+RN+ E+G+ ++R + +D + + K Sbjct: 239 ARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDG------FDSLG---KVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRK 390
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20 Identity = 64/203 (31.53%), Postives = 105/203 (51.72%), Query Frame = 2 Query: 8 ARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIV 595 AR+ AP+ +F+DEIDAI R + R +T L+ ++DG GV + + TNRPD LD +RPGR DR++ I PD K R QIF ++ +L + ++ + L T GF+GADI N+ NE+ +++ R + + +D+ ++ G+ +K + +S ++R +A HE+GH V Sbjct: 415 ARQCAPSIIFIDEIDAIGRARGRGGFSGGNDERESTLNQLLVEMDGFGTTAGV---------VVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFDSAIDR-VIGGL---------EKKNRVISKLERRTVAYHESGHAV 598
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20 Identity = 56/166 (33.73%), Postives = 93/166 (56.02%), Query Frame = 2 Query: 14 RNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 508 +N PA +F+DEIDAIA + + + R L+ +DG K R+ + + I ATNRP+ +D R GR DR + IG+PDA R++I +H+ +LA+DV+ E++ GF GAD+ +L +E+ + +R+ I +D D +D ++L + V + Sbjct: 301 KNQPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNL---------VVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLCSEAALQQIREKMELIDLED--DQIDAEVLNSLAVTM 455 HSP 2 Score: 77.411 bits (189), Expect = 7.754e-14 Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 2 Query: 8 ARRNAPAFVFVDEIDAIA-GRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSK 442 AR AP +F DE+D+IA R + +I Q+ T +D ++ ++ V I ATNRPD +D +RPGR+D+ +YI LPD R QI L++D++ L TVGFSGAD+ + + +++R+ K Sbjct: 572 ARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQV-----LTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVGFSGADLTEICQRACKLAIRESIEK 712
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20 Identity = 58/167 (34.73%), Postives = 89/167 (53.29%), Query Frame = 2 Query: 5 IARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLE 490 +A++ AP+ +F+DEIDAI G H D + T L+A++DG R V + ATNR D LD +RPGR DR + I LPD + R+ I +H+ + EDVN E+ T G +GAD+R + E+G+ ++R + +D + +DK L+ Sbjct: 241 LAKQRAPSIIFIDEIDAI-GAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRGDVK---------IVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIRMERDAVNSEDFMKAIDKLALD 397
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20 Identity = 59/162 (36.42%), Postives = 87/162 (53.70%), Query Frame = 2 Query: 5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478 +A+ AP+ VF+DEIDAI D + T L+A +DG + R V I ATNR D LD +RPGR DR + I LPD + R I VH+ L+EDV+ E+ T G +GA++ + E+G+ ++RK H ++ Q+D + L+K Sbjct: 241 LAKEKAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIG---------ATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDFLTALNK 393
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20 Identity = 56/155 (36.13%), Postives = 87/155 (56.13%), Query Frame = 2 Query: 5 IARRNAPAFVFVDEIDAIAGR----HARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQD 457 +A + P+ VF+DEIDAI + ++ + + T L+ QLDG R V I ATNR + LD +RPGRIDR++ LPD K + +IF +H++ LA+DV +EL+ SGADI+ + E+G+M++R+ K+ +D Sbjct: 273 VAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK---------VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 418 The following BLAST results are available for this feature:
BLAST of CX296765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 294
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296765 ID=CX296765; Name=CX296765; organism=Citrus clementina; type=EST; length=684bpback to top |