CX296765

Overview
NameCX296765
Unique NameCX296765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 57/162 (35.19%), Postives = 92/162 (56.79%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHA----RKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +AR  AP+ +F+DEIDAIA +        D   + T   L+A+LDG      +D + +      I ATNR D +D   +RPGR DR + + LP  + R++I  +H+   ++A DV+ E +   T GFSGAD++ +V E+G  ++R+G   I   D++  ++K
Sbjct:  227 LAREKAPSILFIDEIDAIASKRVDIGTSGDREVQRTMLQLLAELDGFDP---LDNVKV------IAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDDMIKAVEK 379          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 71/229 (31.00%), Postives = 108/229 (47.16%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHAR------KDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVH----SAGKQLAEDVN--FEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGK 658
            AR  AP+ +F+DEIDAI     +       +  R AT   L+ ++DG          +    V+ +  TNRPD LD   +RPGR DR + I  PD   R QI+ VH    +    L +D+N    +L   T GF+GADI N  NE+ +++ R     I        +++ ++ G+         +K  + +S E+KR +A HEAGH V        D      ++P G+
Sbjct:  376 ARSMAPSIIFIDEIDAIGKERGKGGALGGANDEREATLNQLLVEMDG---------FTTSDQVVVLAGTNRPDVLDNALMRPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTDDMNNLSGKLATLTPGFTGADIANACNEAALIAARHNDPYITIHHFEQAIER-VIAGL---------EKKTRVLSKEEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQ 585          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.544e-20
Identity = 55/162 (33.95%), Postives = 87/162 (53.70%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +A++ +P+ +F+DEIDAI           D     T   L+A++DG          S R  V  I ATNR D LD   +RPGR DR + I  PD + RV I ++H AG  + + V+  ++  RT G +GAD+R++  E+G+ ++R  H  +  +D    ++K
Sbjct:  241 LAKKKSPSIIFIDEIDAIGASRTESNTSGDREVHRTLMQLLAEMDG---------FSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFAIRSDHEMVTLEDFEQSIEK 393          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 58/202 (28.71%), Postives = 107/202 (52.97%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRH--ARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHL 607
            A++N+P  VF+DEID++ G    +   P    T   L+A++DG + + G+         I + ATN+ + LD   +RPGR D ++++  P  + R+ + +++    +   +++ E+L   TVG++GADI+NLVN++ I +  +    ++   + D  D+ L+ G       ++Q            R+ A HEAGH ++A L
Sbjct:  254 AKQNSPCLVFIDEIDSVGGNRTFSPHHPFANQTINQLLAEMDGFQSKEGI---------IVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAAALRNDPFVEMHHLWDARDR-LIMGPAKRRPLDDQ----------TNRVSAFHEAGHALVALL 435          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 55/162 (33.95%), Postives = 83/162 (51.23%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +AR      VF DE+DAI G         D   + T   ++ QLDG   R  +           + ATNRPD LD   +RPGR+DR++  GLPD + R QIF +H+       D+ FE L       +GADIR++  E+G+ ++R     + ++D +D ++K
Sbjct:  255 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK---------VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNK 407          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 55/162 (33.95%), Postives = 83/162 (51.23%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +AR      VF DE+DAI G         D   + T   ++ QLDG   R  +           + ATNRPD LD   +RPGR+DR++  GLPD + R QIF +H+       D+ FE L       +GADIR++  E+G+ ++R     + ++D +D ++K
Sbjct:  256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK---------VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNK 408          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19
Identity = 57/161 (35.40%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            AR + P  +F+DEIDAI GR   +    D   + T   L+ Q+DG       D +S    V  I ATNRPD LD   +RPGR+DR++ I LP+   RV +  +H+A      DV++E +     GF+ AD+RN+  E+G+ ++R     + ++D +  + K
Sbjct:  226 ARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDG------FDTLS---KVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRK 377          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 54/162 (33.33%), Postives = 91/162 (56.17%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +ARR AP+ VF+DEIDAI  +        +   + T   L+A++DG K    +D + +      I ATNR D LD   +RPGR DR + + LP+ + R +IF ++    +   ++ ++ L   T GFSGA+I+N+  E+G +++R G   +   D++  ++K
Sbjct:  222 LARRKAPSIVFIDEIDAIGAKRVDMGTSGEREIQRTLMQLLAEIDGFKP---LDNVKI------IAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEAGYIAIRNGRKYVNMTDLITAIEK 374          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 55/162 (33.95%), Postives = 83/162 (51.23%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +AR      VF DE+DAI G         D   + T   ++ QLDG   R  +           + ATNRPD LD   +RPGR+DR++  GLPD + R QIF +H+       D+ FE L       +GADIR++  E+G+ ++R     + ++D +D ++K
Sbjct:  256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK---------VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNK 408          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 55/162 (33.95%), Postives = 83/162 (51.23%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +AR      VF DE+DAI G         D   + T   ++ QLDG   R  +           + ATNRPD LD   +RPGR+DR++  GLPD + R QIF +H+       D+ FE L       +GADIR++  E+G+ ++R     + ++D +D ++K
Sbjct:  256 MARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIK---------VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNK 408          
The following BLAST results are available for this feature:
BLAST of CX296765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
PSMR_AERPE4.245e-2035.19Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
AFG3_YEAST4.245e-2031.00Mitochondrial respiratory chain complexes assembly... [more]
PSMR_METPE5.544e-2033.95Proteasome-activating nucleotidase OS=Methanosphae... [more]
YME1_SCHMA9.457e-2028.71Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
PRS7_PRUPE9.457e-2033.9526S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7A_ARATH9.457e-2033.9526S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS10_DICDI1.235e-1935.4026S protease regulatory subunit S10B OS=Dictyostel... [more]
PSMR_SULTO1.613e-1933.33Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PRS7_SPIOL1.613e-1933.9526S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_ORYSJ1.613e-1933.9526S protease regulatory subunit 7 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC05802E10SK FerrChloL1 Citrus clementina cDNA clone C05802E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296765 ID=CX296765; Name=CX296765; organism=Citrus clementina; type=EST; length=684bp
TTCCATTGCAAGGAGAAACGCACCTGCTTTTGTATTTGTGGATGAAATTG
ATGCTATTGCTGGAAGGCATGCCAGAAAGGATCCACGAAGAAGGGCAACA
TTTGAGGCTCTAATTGCACAACTTGACGGGGACAAGGAAAGAACTGGTGT
TGATCGGATTTCACTTAGACAAGCTGTCATATTCATCTGCGCTACCAATA
GGCCAGATGAATTGGACCTTGAGTTTGTCCGCCCTGGACGTATTGACCGC
CGTTTATACATTGGTTTGCCTGATGCAAAGCAACGAGTGCAAATATTTGA
TGTGCACAGTGCAGGAAAGCAACTTGCAGAAGATGTAAACTTTGAAGAGC
TTGTCTTCCGTACAGTTGGTTTTTCTGGGGCAGATATTAGAAATCTTGTG
AATGAATCAGGAATAATGTCGGTGAGAAAAGGACATTCCAAAATCCAGCA
ACAAGACATTGTTGATGTGCTAGATAAACAATTGCTTGAGGGTATGGGTG
TACTTCTTACAGAAGAAGAGCAACAGAAATGTGAACAAAGTGTTTCTTTT
GAAAAAAAGAGGCTCTTGGCTGTACATGAAGCTGGGCACATAGTATTAGC
TCACCTTTTTCCTCGATTTGATTGGCATGCATTTTCTCAGCTCCTACCTG
GTGGCAAGGAAAACTGCATATCTGTGTTCTATCC
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