CX296765

Overview
NameCX296765
Unique NameCX296765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 66/186 (35.48%), Postives = 103/186 (55.38%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSF 550
            +A+  +P+ +F+DEIDA+A +  +     D   + T   L+A+LDG + R  V           + ATNRPD LD   +RPGR DR + + LP+   R +I  +H++G  LAE+V+ E L   T G SGAD++ +  E+G+ ++R    ++   D +D +DK     MGV   +EE+ K E  V F
Sbjct:  239 LAKEKSPSIIFIDEIDAVAAKRLKSSTSGDREVQRTLMQLLAELDGFESRGNVG---------IVAATNRPDILDPALLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADFMDAVDKI----MGV--EKEEEYKQETGVMF 409          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 66/199 (33.17%), Postives = 103/199 (51.76%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLA 601
            A++ +P  +F+DEIDAI G    KD +  + T   L+ +LDG K+  G+         I I ATN P+ LD   VRPGR DR + +  PD + R QI + H +    ++DV+   +   T GFSGAD+ NLVN + + +   G   +   D+    D+       +++  E +      +S E ++L A HE GH ++A
Sbjct:  318 AKKRSPCIIFMDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGI---------IVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYAKDR-------IMMGSERKSAV---ISDESRKLTAYHEGGHALVA 497          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARKDPRR----RATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL 484
            +A+  AP+ +F+DE+DAIA R    D       + T   L+A+LDG   R  V  I          ATNR D LD   +RPGR DR + + LP  + R+QIF +H+   +LAEDV+F+EL   T G SGADI+ +  E+G+ ++R+  +K+   D    ++K L
Sbjct:  229 LAKEKAPSIIFIDELDAIAARRTNSDTSGDREVQRTMMQLLAELDGFDPRGDVKVIG---------ATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVL 383          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH4_ORYSJ (Cell division protease ftsH homolog 4, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH4 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.841e-23
Identity = 67/199 (33.67%), Postives = 101/199 (50.75%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLA 601
            A++ +P  +F+DEIDAI G    KD +  R T   L+ +LDG K+  G+         I I ATN P  LD   VRPGR DR + +  PD + R QI + H      ++DV+   +   T GFSGAD+ NLVN + + +   G   +   D+    D+       +++  E +      +S E ++L A HE GH ++A
Sbjct:  311 AKKRSPCIIFMDEIDAIGGSRNPKDQQYMRMTLNQLLVELDGFKQNEGI---------IVIAATNFPQSLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMNDLEYAKDR-------IMMGSERKSAV---ISDESRKLTAYHEGGHALVA 490          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 58/145 (40.00%), Postives = 87/145 (60.00%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSK 442
            AR++AP  +F DEIDAIA       P+R     + +     ++  T +D +   + V+ I ATNRPD +D   +RPGR+DR + + +PD K R+ IF +H+    LAEDVN EEL  +T G++GADI  L  E+ +++VR+   K
Sbjct:  541 ARQSAPCIIFFDEIDAIA-------PKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIEALCREAAMLAVRESIGK 678          

HSP 2 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 61/169 (36.09%), Postives = 94/169 (55.62%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTE 514
            A  NAP+ +F+DEIDAIA    ++D         L+AQL      T +D +  R  V+ I ATNRP+ LD    RPGR DR + IG+PD + R +I  +H+    LAEDV+ + L   T GF GAD+  L  E+ + ++R+    I  +   + + K++L+ + V + +
Sbjct:  268 AEENAPSIIFIDEIDAIA---PKRDEATGEVERRLVAQL-----LTLMDGLKGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLADVTHGFVGADLAALCKEAAMRALRRVLPSIDLE--AEEIPKEVLDNLKVTMDD 426          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 64/199 (32.16%), Postives = 104/199 (52.26%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAG-RHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLA 601
            AR+ AP+ +F+DE+DAI   R+AR     R T   L+  LDG  +        L   V+FI ATN P+ LD    RPGR DR +++ LPD + R+ I   H+    L +DV+   +   T GF+GAD+ NL+N++ + + +   + +  +D+    D+ L+            ++    ++ E K + A HE GH ++A
Sbjct:  355 ARKQAPSIIFIDELDAIGQKRNARDAAHMRQTLNQLLVDLDGFSKNE-----DLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVSMRDLEWSKDRILMGA----------ERKSAFITPENKLMTAYHEGGHALVA 538          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 62/162 (38.27%), Postives = 92/162 (56.79%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +AR  AP+ +F+DEIDAI  R  R     D   + T   L+A++DG      +D I +      I ATNR D LD   +RPGR DR + I LPD + R +IF +H+    LAEDV+ ++L   T G SGADI+ +  E+G+M++R+    +   D +  +D+
Sbjct:  267 LAREKAPSIIFIDEIDAIGARRMRDATSGDREVQRTLTQLLAEMDGFDP---LDDIKV------IAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDFLKAVDR 419          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.997e-23
Identity = 61/203 (30.05%), Postives = 107/203 (52.71%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLL--EGMGVLLTEEEQQKCEQSVSFEKKR---LLAVHEAGHIVLA 601
            A++ AP  VF+DEIDA+     + +   + T   L+ ++DG ++  G+         I + ATN PD LD    RPGR DR + +  PD + R +I +++   K ++ DV+   +   T GF+GAD+ NLVN + I +  +G  K+    +    D+ ++  E   + +++E ++ C   + +   R   L A HE+GH ++A
Sbjct:  416 AKKKAPCIVFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGI---------IVMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPVSSDVDVNAIARSTPGFNGADLANLVNIAAIKAAVEGADKLAAAQLEFAKDRIIMGTERKSMFISDESKKACLFKLLYFILRELILTAYHESGHAIVA 609          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 54/162 (33.33%), Postives = 95/162 (58.64%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +AR+ AP+ +F+DE+D+IA R   +    D   + T   L+A++DG  +R  +           I ATNRPD LD   +RPGR DR +++ +P  + R +I  +H     LAED++F++L   T G SGAD++ +  E+G+ +VR+    ++ ++ ++ ++K
Sbjct:  247 MARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIR---------IIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVEK 399          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.138e-23
Identity = 55/162 (33.95%), Postives = 95/162 (58.64%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRHARK----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +AR+ AP+ +F+DE+D+IA R   +    D   + T   L+A++DG  +R  +           I ATNRPD LD   +RPGR DR +++ +P  + R +I  +H     LA D++F++L   T G SGAD++ +  E+G+ +VRK  + ++ +D ++ ++K
Sbjct:  247 MARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIR---------IIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVEK 399          
The following BLAST results are available for this feature:
BLAST of CX296765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
PSMR_METTH1.410e-2335.48Proteasome-activating nucleotidase OS=Methanobacte... [more]
FTSH5_ORYSJ1.410e-2333.17Cell division protease ftsH homolog 5, mitochondri... [more]
PSMR_ARCFU1.841e-2338.41Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
FTSH4_ORYSJ1.841e-2333.67Cell division protease ftsH homolog 4, mitochondri... [more]
Y1156_METJA3.141e-2340.00Cell division cycle protein 48 homolog MJ1156 OS=M... [more]
YME1_SCHPO4.102e-2332.16Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
PSMR_METKA6.997e-2338.27Proteasome-activating nucleotidase OS=Methanopyrus... [more]
FTSH9_ORYSJ6.997e-2330.05Cell division protease ftsH homolog 9, chloroplast... [more]
PSMR_METMA9.138e-2333.33Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METAC9.138e-2333.95Proteasome-activating nucleotidase OS=Methanosarci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802E10SK FerrChloL1 Citrus clementina cDNA clone C05802E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296765 ID=CX296765; Name=CX296765; organism=Citrus clementina; type=EST; length=684bp
TTCCATTGCAAGGAGAAACGCACCTGCTTTTGTATTTGTGGATGAAATTG
ATGCTATTGCTGGAAGGCATGCCAGAAAGGATCCACGAAGAAGGGCAACA
TTTGAGGCTCTAATTGCACAACTTGACGGGGACAAGGAAAGAACTGGTGT
TGATCGGATTTCACTTAGACAAGCTGTCATATTCATCTGCGCTACCAATA
GGCCAGATGAATTGGACCTTGAGTTTGTCCGCCCTGGACGTATTGACCGC
CGTTTATACATTGGTTTGCCTGATGCAAAGCAACGAGTGCAAATATTTGA
TGTGCACAGTGCAGGAAAGCAACTTGCAGAAGATGTAAACTTTGAAGAGC
TTGTCTTCCGTACAGTTGGTTTTTCTGGGGCAGATATTAGAAATCTTGTG
AATGAATCAGGAATAATGTCGGTGAGAAAAGGACATTCCAAAATCCAGCA
ACAAGACATTGTTGATGTGCTAGATAAACAATTGCTTGAGGGTATGGGTG
TACTTCTTACAGAAGAAGAGCAACAGAAATGTGAACAAAGTGTTTCTTTT
GAAAAAAAGAGGCTCTTGGCTGTACATGAAGCTGGGCACATAGTATTAGC
TCACCTTTTTCCTCGATTTGATTGGCATGCATTTTCTCAGCTCCTACCTG
GTGGCAAGGAAAACTGCATATCTGTGTTCTATCC
back to top