CX296765

Overview
NameCX296765
Unique NameCX296765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 66/203 (32.51%), Postives = 105/203 (51.72%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHAR-----KDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIV 595
            AR+NAP  +F+DEIDAI     R      +  R +T   L+ ++DG          +  + ++    TNRPD LD   +RPGR DR++ I  PD   R QIF VH    + A++++   + L   T GF+GADI N+ NE  +++ R   +++Q       +++ +  G+         +K  + +S E+K  +A HEAGH V
Sbjct:  384 ARKNAPCIIFIDEIDAIGKARGRGGQFGSNDERESTLNQLLVEMDG---------FTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQAIER-VTAGL---------EKKSRVLSPEEKNTVAHHEAGHAV 567          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.193e-22
Identity = 67/204 (32.84%), Postives = 106/204 (51.96%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVL 598
            A++ AP+ +F+DEIDA+A     K     +  R  T   L+ ++DG              AVI + ATNR D LD    RPGR DR + +  PD   R  I  VH + K+L   +DVN   +   T GF+GAD+ NLVNE+ +++ RK  + +++ D +  +++ +    G+       +K    +   +K ++A HEAGH V+
Sbjct:  413 AKKEAPSIIFIDEIDAVAKSRDGKFRMGSNDEREQTLNQLLTEMDG---------FDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTGADLANLVNEAALLAGRKNKTNVEKIDFIQAVERSI---AGI-------EKKSARLKGNEKAVVARHEAGHAVV 597          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 67/203 (33.00%), Postives = 108/203 (53.20%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHAR-----KDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIV 595
            AR+ AP+ +F+DEIDAI     R      +  R +T   L+ ++DG    +GV         + +  TNRPD LD   +RPGR DR++ I  PD K R QIF ++    +L  + +F  + L   T GF+GADI N+ NE+ +++ R   ++I  Q     +D+ ++ G+         +K  + +S  ++R +A HE+GH V
Sbjct:  423 ARQCAPSIIFIDEIDAIGRARGRGGFSGSNDERESTLNQLLVEMDGFGTTSGV---------VVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFRIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEETQITMQHFESAIDR-IIGGL---------EKKNKVISKLERRTVAYHESGHAV 606          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: CDC48_YEAST (Cell division control protein 48 OS=Saccharomyces cerevisiae GN=CDC48 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 59/168 (35.12%), Postives = 96/168 (57.14%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPR-RRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLL 508
            A +NAPA +F+DEID+IA +  + +    R     L+  +DG K R+ V         + I ATNRP+ +D    R GR DR + IG+PDA  R+++  +H+   +LA+DV+ E L   T G+ GADI +L +E+ +  +R+    I   +  D +D ++L+ +GV +
Sbjct:  303 AEKNAPAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKARSNV---------VVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLEALAAETHGYVGADIASLCSEAAMQQIREKMDLIDLDE--DEIDAEVLDSLGVTM 459          

HSP 2 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 51/171 (29.82%), Postives = 87/171 (50.88%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQL-LEGMGVLLTEE 517
            AR  AP  VF+DE+D+IA              + ++ QL      T +D ++ ++ V  I ATNRPD++D   +RPGR+D+ +Y+ LPD   R+ I +       L   +    +   T GFSGAD+  +V  +   +++      +Q +     +K++ +EG  V +T+E
Sbjct:  576 ARAAAPTVVFLDELDSIAKARGGSLGDAGGASDRVVNQL-----LTEMDGMNAKKNVFVIGATNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRKTPLEPGLELTAIAKATQGFSGADLLYIVQRAAKYAIKDSIEAHRQHE----AEKEVKVEGEDVEMTDE 737          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 64/207 (30.92%), Postives = 110/207 (53.14%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNF--EELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVLAHL 607
            AR  AP  V++DEIDA+  + +       +     T   L+ ++DG         +     VI + +TNR D LD   +RPGR+DR ++I LP  ++R +IF+ H  G +L +  +F  + L   T GFSGADI N+ NE+ + + R+GH+ +   +    +++ ++ G           K  + +S E++R++A HE+GH ++  L
Sbjct:  397 ARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDG---------MGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFEYAVER-VIAGTA---------KKSKILSKEEQRVVAFHESGHALVGWL 584          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 59/162 (36.42%), Postives = 95/162 (58.64%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDK 478
            +A+R AP+ +F+DEIDAI  +        +   + T   L+A+LDG      +D + +      I ATNR D LD   +RPGR DR + + LPD K R +IF+++    ++ +++N E L   T GFSGADI+N+  E+  M++R G +K+   D+V+ ++K
Sbjct:  222 MAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDP---LDNVKI------IAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRNKVTMNDLVEAINK 374          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 67/204 (32.84%), Postives = 104/204 (50.98%), Query Frame = 2
Query:    8 ARRNAPAFVFVDEIDAIAGRHARK-----DPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQL--AEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSFEKKRLLAVHEAGHIVL 598
            A++ AP+ +F+DEIDA+A     K     +  R  T   L+ ++DG              AVI + ATNR D LD    RPGR DR + +  PD   R  I  VH + K+L   +DVN   +   T GF+GAD+ NLVNE+ +++ RK    + + D +  +++ +    G+       +K    +   +K ++A HEAGH V+
Sbjct:  417 AKKEAPSIIFIDEIDAVAKSRDGKFRMVSNDEREQTLNQLLTEMDG---------FDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDKIDFIHAVERSI---AGI-------EKKTARLKGSEKAVVARHEAGHAVV 601          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 60/179 (33.52%), Postives = 103/179 (57.54%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQK 529
            +A+R AP+ +F+DEIDAI  +        +   + T   L+A+LDG      +D + +      I ATNR D LD   +RPGR DR + + LPD + R +IF+++    ++ +++N E L   + GFSGADI+N+  E+  M++R G +K+  +D+VD + K  ++   +   +E ++K
Sbjct:  222 MAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNP---LDNVKI------IAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKERREK 391          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 60/179 (33.52%), Postives = 103/179 (57.54%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQK 529
            +A+R AP+ +F+DEIDAI  +        +   + T   L+A+LDG      +D + +      I ATNR D LD   +RPGR DR + + LPD + R +IF+++    ++ +++N E L   + GFSGADI+N+  E+  M++R G +K+  +D+VD + K  ++   +   +E ++K
Sbjct:  222 MAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNP---LDNVKI------IAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKERREK 391          
BLAST of CX296765 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.736e-22
Identity = 60/179 (33.52%), Postives = 103/179 (57.54%), Query Frame = 2
Query:    5 IARRNAPAFVFVDEIDAIAGRH----ARKDPRRRATFEALIAQLDGDKERTGVDRISLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFDVHSAGKQLAEDVNFEELVFRTVGFSGADIRNLVNESGIMSVRKGHSKIQQQDIVDVLDKQLLEGMGVLLTEEEQQK 529
            +A+R AP+ +F+DEIDAI  +        +   + T   L+A+LDG      +D + +      I ATNR D LD   +RPGR DR + + LPD + R +IF+++    ++ +++N E L   + GFSGADI+N+  E+  M++R G +K+  +D+VD + K  ++   +   +E ++K
Sbjct:  222 MAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFNP---LDNVKI------IAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKERREK 391          
The following BLAST results are available for this feature:
BLAST of CX296765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
RCA1_SCHPO1.193e-2232.51Mitochondrial respiratory chain complexes assembly... [more]
FTSH7_ARATH1.193e-2232.84Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH8_ORYSJ1.559e-2233.00Cell division protease ftsH homolog 8, mitochondri... [more]
CDC48_YEAST2.659e-2235.12Cell division control protein 48 OS=Saccharomyces ... [more]
SPG7_MOUSE3.473e-2230.92Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
PSMR_SULSO3.473e-2236.42Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
FTSH9_ARATH5.923e-2232.84Cell division protease ftsH homolog 9, chloroplast... [more]
PSMR_SULIY7.736e-2233.52Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM7.736e-2233.52Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL7.736e-2233.52Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionC05802E10SK FerrChloL1 Citrus clementina cDNA clone C05802E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296765 ID=CX296765; Name=CX296765; organism=Citrus clementina; type=EST; length=684bp
TTCCATTGCAAGGAGAAACGCACCTGCTTTTGTATTTGTGGATGAAATTG
ATGCTATTGCTGGAAGGCATGCCAGAAAGGATCCACGAAGAAGGGCAACA
TTTGAGGCTCTAATTGCACAACTTGACGGGGACAAGGAAAGAACTGGTGT
TGATCGGATTTCACTTAGACAAGCTGTCATATTCATCTGCGCTACCAATA
GGCCAGATGAATTGGACCTTGAGTTTGTCCGCCCTGGACGTATTGACCGC
CGTTTATACATTGGTTTGCCTGATGCAAAGCAACGAGTGCAAATATTTGA
TGTGCACAGTGCAGGAAAGCAACTTGCAGAAGATGTAAACTTTGAAGAGC
TTGTCTTCCGTACAGTTGGTTTTTCTGGGGCAGATATTAGAAATCTTGTG
AATGAATCAGGAATAATGTCGGTGAGAAAAGGACATTCCAAAATCCAGCA
ACAAGACATTGTTGATGTGCTAGATAAACAATTGCTTGAGGGTATGGGTG
TACTTCTTACAGAAGAAGAGCAACAGAAATGTGAACAAAGTGTTTCTTTT
GAAAAAAAGAGGCTCTTGGCTGTACATGAAGCTGGGCACATAGTATTAGC
TCACCTTTTTCCTCGATTTGATTGGCATGCATTTTCTCAGCTCCTACCTG
GTGGCAAGGAAAACTGCATATCTGTGTTCTATCC
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