CX296769

Overview
NameCX296769
Unique NameCX296769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296769_ssr144 microsatellite CX296769_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig872 contig Ccv1_Contig872:52..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.248e-48
Identity = 96/159 (60.38%), Postives = 116/159 (72.96%), Query Frame = -3
Query:  243 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 716
            MS+IPS FG RR+NV +P SLD+WDPF  + L ++   +    +ET+ FAN  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+NA V++VKA MENGVLTVT           K+I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.236e-47
Identity = 102/157 (64.97%), Postives = 115/157 (73.25%), Query Frame = -3
Query:  243 RRTNVFDPVSLDVWDPFDGFL-----SSALTNAPSSAR----ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 686
            RR+NVFDP SLD+WDPFDGF      SS+ +  PS  R    ET+ FA ARIDWKETP+AHVFKAD+PGL+          G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT           K+I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.697e-47
Identity = 98/160 (61.25%), Postives = 114/160 (71.25%), Query Frame = -3
Query:  243 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 716
            MSLIPSIFGG R+NVFDP SLD+WDPF  F      + P+S+   E S F N R+DWKET +AHV KAD+PGL+           R+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT           K IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.697e-47
Identity = 101/159 (63.52%), Postives = 117/159 (73.58%), Query Frame = -3
Query:  243 MSLIPSIFGGRR-TNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 716
            MSLIP IFG RR T+VFDP S+DV+DPF       L    S++ ETS FAN RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPF-----KELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.012e-47
Identity = 89/139 (64.03%), Postives = 107/139 (76.98%), Query Frame = -3
Query:  300 MSLIPSIFGGRRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 716
            MS+IPS F  +R+N+FDP SLD WDPF G +S+        ARET+   NARIDWKETP+AHV KADLPG++          GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIIST------EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.367e-46
Identity = 95/157 (60.51%), Postives = 112/157 (71.34%), Query Frame = -3
Query:  243 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSS---------ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 686
            RR+NVFDP SLD+WDPFDGF   + + +  S         + ET+ FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+++G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.785e-46
Identity = 93/148 (62.84%), Postives = 111/148 (75.00%), Query Frame = -3
Query:  243 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 686
            RR+NVFDP SLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.976e-46
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = -3
Query:  243 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 686
            RR+NVFDP SLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.193e-46
Identity = 93/150 (62.00%), Postives = 110/150 (73.33%), Query Frame = -3
Query:  243 RRTNVFDPVSLDVWDPFDGFLSSALTNA--PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 686
            RR+NVFDP SLD+WDPFDGF   + + +  P +  + + FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.511e-45
Identity = 98/159 (61.64%), Postives = 117/159 (73.58%), Query Frame = -3
Query:  243 MSLIPSIFGGRRTN-VFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 716
            MSLIP IFG RR++ +FDP S+DV+DPF       L    +++ ETS FAN RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPF-----RELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CX296769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP12_DAUCA4.248e-4860.3818.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ORYSJ1.236e-4764.9717.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP15_SOYBN4.697e-4761.2517.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE4.697e-4763.5217.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_HELAN8.012e-4764.0317.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS181_ORYSJ1.367e-4660.5118.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ1.785e-4662.8416.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ3.976e-4662.1616.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS174_ORYSJ5.193e-4662.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLPE1.511e-4561.6417.7 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionC05802F03SK FerrChloL1 Citrus clementina cDNA clone C05802F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296769 ID=CX296769; Name=CX296769; organism=Citrus clementina; type=EST; length=742bp
CGCATTACAAAATATATTTTATTGCATCACACTTTTTTATCATTTAAAAA
ACTAGTTACAACGCTTGAGACTGGCTCCTGAAGCTCTTGCAAACACACAA
ACATAATCACATCAAATTAAACAGGGGGAAGGGAAGAAAACAAACACACA
CACACATACAAACACACAAGGGCTTTGCTTTCGTACCAAATTTATTAGCA
AACCAAAGACACAATCTTGAAAACATTTACAGTTATCACTTAGCCAGAGA
TCTCAATAGCCTTAACTTCAGGTTTCTTCTCCTCCTGTTTAGGAACGGTG
ACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGTTCCACCTTAGC
ATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACTGCTCCTCTCGA
CGCGATGCCACTTGTCATTCTTCTCTTCCTGCTCCTTGCTCCTCTCTCCG
CTTATCTGCAGAATCCTGCCCTATTCAACCTCAACTTTTACTTCTTCTTT
CCTCAGCCCTGGAAGATCAGCTTTGAATACGTGAGCCTGAGGAGTCTCTT
TCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCCTAGCCGAAGAC
GGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAAGGATCCCATAC
ATCTAATGAAACTGGATCGAACACGTTGGTTCTTCGGCCACCGAAGATGC
TTGGAATGAGTGACATTATGGCAACTGGGACGCTAATTAATG
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