CX296769

Overview
NameCX296769
Unique NameCX296769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.511e-45
Identity = 93/148 (62.84%), Postives = 112/148 (75.68%), Query Frame = -3
Query:  243 RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 686
            RR+NVFDP + D WDPFDG   S +    +S R+T+ FANAR+DWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVP--ATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.973e-45
Identity = 94/145 (64.83%), Postives = 115/145 (79.31%), Query Frame = -3
Query:  297 MSLIPSIF--GGRRTNVFDPVSLD-VWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 716
            MSLIP+ +   GRR+N+FDP SLD +WDPF G L S L+  P S  A ET+ FANARIDWKETP+AHVFKADLPG++          G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFG-LPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.499e-45
Identity = 94/155 (60.65%), Postives = 109/155 (70.32%), Query Frame = -3
Query:  243 RRTNVFDPVSLDVWDPFDGF-------LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 686
            RR N FDP SLD+WDP DGF        SS+ +  P +  + + FA ARIDWKETP+ HVFKAD+PGL+          G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+ISG
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.794e-45
Identity = 97/161 (60.25%), Postives = 118/161 (73.29%), Query Frame = -3
Query:  243 MSLIPSIFGGRRTN-VFDPVSLDVWDPFD--GFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 716
            MSLIP IFG RR++ +FDP S+DV+DPF   GF S+       ++ E+S FAN RIDWKETP+ HVFK DLPGL+           R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPST-------NSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.850e-44
Identity = 92/159 (57.86%), Postives = 112/159 (70.44%), Query Frame = -3
Query:  243 MSLIPSIFGG-RRTNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 716
            MS+IPS F   RR+N+FDP SLDVWDPF    SS+L+      RE S   NAR+DW+ETP+AHVFKADLPGL+            +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVLTVT           K+I+ISG
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS------RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.483e-42
Identity = 90/149 (60.40%), Postives = 110/149 (73.83%), Query Frame = -3
Query:  243 RRTNVFDPVSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 686
            RR+NVFDP + D+W DPFD F S     +  S+ ET+ FANAR+DWKETP+AHVFK DLPG++          G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT           KAIEISG
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGSS-ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.013e-41
Identity = 86/142 (60.56%), Postives = 105/142 (73.94%), Query Frame = -3
Query:  246 DPVSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIS 668
            DP SLDVWDPF  F  +++  +A S  +E S F + RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K+IEIS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.949e-41
Identity = 89/149 (59.73%), Postives = 108/149 (72.48%), Query Frame = -3
Query:  243 RRTNVFDPVSLDVW-DPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 686
            RRTNVFDP + D+W DPFD F  S +        ET+ FANAR+DWKETP+AHVFKADLPG++          G +L +SGER+KE+E+KNDKWHRVERSSGKF+RRFRL ++AKVE+VKA +ENGVLTVT           KAI+ISG
Sbjct:    5 RRTNVFDPFA-DLWADPFDTF-RSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.263e-40
Identity = 84/142 (59.15%), Postives = 100/142 (70.42%), Query Frame = -3
Query:  297 MSLIPSIFGGRR--TNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 716
            MSLIPS FG  R   ++FDP SLDVWDPF       L    S + ETS   NAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPF-----KELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.239e-39
Identity = 86/143 (60.14%), Postives = 100/143 (69.93%), Query Frame = -3
Query:  297 MSLIPSIFGGRR---TNVFDPVSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 716
            MSLIPS FG  R    N+FDP SLDVWDPF           PSS+  +S  ANAR+DWKET +AHVFKADLPG++            +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKEL------QFPSSS--SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CX296769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS16C_ORYSJ1.511e-4562.8416.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_CHERU1.973e-4564.8318.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS177_ORYSJ7.499e-4560.6517.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLLC9.794e-4560.2517.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS17B_ARATH2.850e-4457.8617.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS16A_WHEAT3.483e-4260.4016.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP11_MEDSA1.013e-4160.5618.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS16B_WHEAT2.949e-4159.7316.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HS178_ARATH7.263e-4059.1517.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH1.239e-3960.1417.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05802F03SK FerrChloL1 Citrus clementina cDNA clone C05802F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296769 ID=CX296769; Name=CX296769; organism=Citrus clementina; type=EST; length=742bp
CGCATTACAAAATATATTTTATTGCATCACACTTTTTTATCATTTAAAAA
ACTAGTTACAACGCTTGAGACTGGCTCCTGAAGCTCTTGCAAACACACAA
ACATAATCACATCAAATTAAACAGGGGGAAGGGAAGAAAACAAACACACA
CACACATACAAACACACAAGGGCTTTGCTTTCGTACCAAATTTATTAGCA
AACCAAAGACACAATCTTGAAAACATTTACAGTTATCACTTAGCCAGAGA
TCTCAATAGCCTTAACTTCAGGTTTCTTCTCCTCCTGTTTAGGAACGGTG
ACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGTTCCACCTTAGC
ATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACTGCTCCTCTCGA
CGCGATGCCACTTGTCATTCTTCTCTTCCTGCTCCTTGCTCCTCTCTCCG
CTTATCTGCAGAATCCTGCCCTATTCAACCTCAACTTTTACTTCTTCTTT
CCTCAGCCCTGGAAGATCAGCTTTGAATACGTGAGCCTGAGGAGTCTCTT
TCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCCTAGCCGAAGAC
GGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAAGGATCCCATAC
ATCTAATGAAACTGGATCGAACACGTTGGTTCTTCGGCCACCGAAGATGC
TTGGAATGAGTGACATTATGGCAACTGGGACGCTAATTAATG
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