CX296769

Overview
NameCX296769
Unique NameCX296769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296769_ssr144 microsatellite CX296769_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig872 contig Ccv1_Contig872:52..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = -3
Query:  297 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 608
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = -3
Query:  297 RRTNVFDPVS----LDVWDPFDGFLSSALTNAPSSARETSQFANA-RIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 686
            +RT  +DP      L  WDPF+      L N P  A      A     + +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   15 QRTREWDPFQQMQELMNWDPFE------LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = -3
Query:  297 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 572
            A   +DW+ETP AHVF+ DLPGL           G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 44/119 (36.97%), Postives = 59/119 (49.58%), Query Frame = -3
Query:  300 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 638
            F G     L   P      S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of CX296769 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -3
Query:  297 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXX*GRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 608
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of CX296769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS177_ARATH5.795e-1338.3217.7 kDa class II heat shock protein OS=Arabidopsi... [more]
SP21_STIAU7.569e-1334.07Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HS178_ORYSJ7.569e-1338.7417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP16_ORYSJ1.686e-1236.9716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS176_ARATH8.368e-1236.4517.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC05802F03SK FerrChloL1 Citrus clementina cDNA clone C05802F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296769 ID=CX296769; Name=CX296769; organism=Citrus clementina; type=EST; length=742bp
CGCATTACAAAATATATTTTATTGCATCACACTTTTTTATCATTTAAAAA
ACTAGTTACAACGCTTGAGACTGGCTCCTGAAGCTCTTGCAAACACACAA
ACATAATCACATCAAATTAAACAGGGGGAAGGGAAGAAAACAAACACACA
CACACATACAAACACACAAGGGCTTTGCTTTCGTACCAAATTTATTAGCA
AACCAAAGACACAATCTTGAAAACATTTACAGTTATCACTTAGCCAGAGA
TCTCAATAGCCTTAACTTCAGGTTTCTTCTCCTCCTGTTTAGGAACGGTG
ACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGTTCCACCTTAGC
ATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACTGCTCCTCTCGA
CGCGATGCCACTTGTCATTCTTCTCTTCCTGCTCCTTGCTCCTCTCTCCG
CTTATCTGCAGAATCCTGCCCTATTCAACCTCAACTTTTACTTCTTCTTT
CCTCAGCCCTGGAAGATCAGCTTTGAATACGTGAGCCTGAGGAGTCTCTT
TCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCCTAGCCGAAGAC
GGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAAGGATCCCATAC
ATCTAATGAAACTGGATCGAACACGTTGGTTCTTCGGCCACCGAAGATGC
TTGGAATGAGTGACATTATGGCAACTGGGACGCTAATTAATG
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