CX296771

Overview
NameCX296771
Unique NameCX296771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5617 contig Ccv1_Contig5617:940..1675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  401 RRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTW-RVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLA 730
            R  A+ ++ DH P  + E+S IE+ GG+V    G   RV G LAVSR  GD++LK ++ +EPE K + I    +FLILASDG+   +SNQEA+D+A+      +A   ++A
Sbjct:  154 RGKAKQMSVDHDPDDDTERSMIESKGGFVTNRPGDVPRVNGLLAVSRVFGDKNLKAYLNSEPEIKDVTIDSHTDFLILASDGISKVMSNQEAVDVAKKLKDPKEAARQVVA 264          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C27_ORYSJ (Probable protein phosphatase 2C 27 OS=Oryza sativa subsp. japonica GN=Os02g0799000 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 51/124 (41.13%), Postives = 72/124 (58.06%), Query Frame = -1
Query:  389 QRRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQW---------IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 733
            +R  A  ++ DHR    +E+ RIE++GGYVD  +    + G LAV+RALGD HL+           + AEPE K+I +  E EFLI+ SDG+WD  SNQ A+D  R   Q  +  +  L CK++
Sbjct:  182 RRGTAIEMSKDHRTCCLNERKRIESLGGYVDDGY----LNGQLAVTRALGDWHLEGLKEVGEPGGPLSAEPELKMITLTKEDEFLIIGSDGIWDFFSNQNAVDFTRKRLQ--EHNDLRLCCKQI 299          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = -1
Query:  443 LAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIAR 724
            +A  L+ DH+P R DE  RI+  GG V    G  RV G LA+SRA+GD +LK ++I +PE  +     E E LILASDGLWD V N+ A  +AR
Sbjct:  251 VAIPLSVDHKPDRPDELIRIQQAGGRVIYWDGA-RVLGVLAMSRAIGDNYLKPYVIPDPEVTVTDRTDEDECLILASDGLWDVVPNETACGVAR 343          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1L_MOUSE (Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  455 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRI---KPEYEFLILASDGLWDKVSNQEAI 712
            L+ DH+P +  E+ RI+  GG++   +G+WRVQG LA+SR+LGD  LK   +  P+  I+     K + EF+ILASDGLWD  SN+EA+
Sbjct:  227 LSHDHKPYQLKERKRIKRAGGFISF-NGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAV 314          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1L_HUMAN (Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  455 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRI---KPEYEFLILASDGLWDKVSNQEAI 712
            L+ DH+P +  E+ RI+  GG++   +G+WRVQG LA+SR+LGD  LK   +  P+  I+     K + EF+ILASDGLWD  SN+EA+
Sbjct:  227 LSHDHKPYQLKERKRIKRAGGFISF-NGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAV 314          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1L_BOVIN (Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  455 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRI---KPEYEFLILASDGLWDKVSNQEAI 712
            L+ DH+P +  E+ RI+  GG++   +G+WRVQG LA+SR+LGD  LK   +  P+  I+     K + EF+ILASDGLWD  SN+EA+
Sbjct:  227 LSHDHKPYQLKERKRIKRAGGFISF-NGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAV 314          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.369e-14
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = -1
Query:  389 LTSDHRPSREDEKSRIETMGGYVDLCHGTW-RVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 712
            +++DH P+ E  +S IE  GG+V    G   RV G LAVSRA GDR+LK  + +EP+ K+  I    E L+LASDGLW  ++NQE +D+A+ F       +P  A K+L
Sbjct:  162 MSTDHDPNVE--RSAIENRGGFVSNMPGDVPRVCGQLAVSRAFGDRNLKSLLKSEPDIKVEDIDYTAELLVLASDGLWKVMNNQEVVDVAKRF------KDPQAAAKQL 262          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C54_ORYSJ (Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  443 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQW---------IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIAR 712
            ++ DHRP    EK R+E++GGYVD  +    + G L V+RALGD HL+           + AEPE K+I +  + EFLI+ SDG+WD  SNQ  +D AR
Sbjct:  195 MSVDHRPCSLSEKLRVESLGGYVDDGY----LNGLLGVTRALGDWHLEGMKEAGNPGGPLSAEPELKMITLTKDDEFLIIGSDGIWDVFSNQNVVDFAR 289          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  452 QRRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTW-RVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAID 733
            Q  +A+ L+ DH P+ E  K  IE  GG+V    G   RV G LAV+RA GD+ LK  + +EP   +  I  + EFLILASDGLW  +SNQEA+D
Sbjct:  161 QNGVAKPLSVDHEPNME--KDEIENRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPYVTVEIIDDDAEFLILASDGLWKVMSNQEAVD 253          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1E_RAT (Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm1e PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  395 AEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACK 721
            A  L   H+P REDEK RIE +GG V +  G WRV GSL+VSRA+GD   K +I  + ++    +    ++LILA DG +D V+  EA+ +     +  +    M+A K
Sbjct:  357 AVELMKPHKPDREDEKQRIEALGGCV-VWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHK 464          
The following BLAST results are available for this feature:
BLAST of CX296771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
P2C17_ARATH2.112e-1542.34Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C27_ORYSJ2.758e-1541.13Probable protein phosphatase 2C 27 OS=Oryza sativa... [more]
P2C37_ARATH3.602e-1548.94Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]
PPM1L_MOUSE8.025e-1547.19Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE... [more]
PPM1L_HUMAN8.025e-1547.19Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE... [more]
PPM1L_BOVIN8.025e-1547.19Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2... [more]
P2C41_ORYSJ1.369e-1444.04Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
P2C54_ORYSJ1.788e-1444.44Probable protein phosphatase 2C 54 OS=Oryza sativa... [more]
P2C39_ARATH2.335e-1448.42Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
PPM1E_RAT3.050e-1439.45Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm... [more]

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Properties
Property NameValue
Genbank descriptionC05802F05SK FerrChloL1 Citrus clementina cDNA clone C05802F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296771 ID=CX296771; Name=CX296771; organism=Citrus clementina; type=EST; length=736bp
TGCCGAATTCGGCACGAGGATTGAATCCTTTTATTTGTATTTGCTTTGAA
CTTGTACACTAAGTTTATGCTTAATTATTATAATAGCTGATAAGTAATGT
TACACAAAGAATGAACTTATTTACAAATCAAAGAACAAAAAATTATCTAT
GACTGGTATCAATTCTCTTCTTCAATTGTAGGTGGAAATGTCCTCCCTAG
ATGATTGATTAAAAGCTACTTGGAATAATTCACCTAATGGTAACTAAGCA
AGAGAAATTTTATTCGGCCTCGGCGTTAGTTCAATTTTCTACTGTATGTT
GTTTTGGGATGATTCAAAGATAGCGCCCCAGTTGAATCAGCATCACACTA
ACATCATCAACTGAGCCCCGTGAAACAGAGAGATCTACAAGCTTCTTACA
CGCTAACATTGGTTCTGGTGCATCAATGCTTTGGCAAAAAGGGCGAGCAA
TGTCAATTGCTTCTTGATTACTGACCTTATCCCAGAGGCCATCAGATGCT
AAGATTAGGAACTCGTATTCGGGTTTGATTCGAATGATTTTAGTCTCTGG
CTCGGCTATGATCCATTGCTTAAGGTGCCGATCCCCAAGGGCTCTAGACA
CAGCTAGAGACCCCTGAACTCTCCATGTACCGTGACATAAATCAACATAG
CCGCCCATCGTCTCAATTCTGCTCTTTTCATCTTCCCTAGAGGGCCGGTG
GTCTGAAGTGAGTGCCTCGGCAAGCCTCCTCTGCTC
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