CX296771

Overview
NameCX296771
Unique NameCX296771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1E_MOUSE (Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  395 AEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACK 721
            A  L   H+P REDEK RIE +GG V +  G WRV GSL+VSRA+GD   K +I  + ++    +    ++LILA DG +D V+  EA+ +     +  +    M+A K
Sbjct:  357 AVELMKPHKPDREDEKQRIEALGGCV-VWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHK 464          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C24_ARATH (Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = -1
Query:  443 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIAR 712
            L++DH+P R DE  RIE  GG V +     RV G LA+SRA+GD +LK ++  EPE  I   + + + LILASDGLWD VSN+ A  +AR
Sbjct:  224 LSTDHKPDRPDELDRIEGAGGRV-IYWDCPRVLGVLAMSRAIGDNYLKPYVSCEPEVTITDRRDD-DCLILASDGLWDVVSNETACSVAR 311          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1E_HUMAN (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = -1
Query:  395 AEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACK 721
            A  L   H+P REDEK RIE +GG + +  G WRV GSL+VSRA+GD   K +I  + ++    +    ++LILA DG +D V+  EA+ +     +  +    M+A K
Sbjct:  371 AVELMKPHKPDREDEKQRIEALGGCI-VWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHK 478          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PP2C2_SCHPO (Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = -1
Query:  443 AEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIAR 721
            AE L+ DH+P+ + EK+RI   GG++D      RV GSLA+SRA+GD   K         Q + A P+  I  I P+ EFLILA DG+WD  S+Q+ ++  R
Sbjct:  152 AEPLSFDHKPNNDVEKARITAAGGFIDF----GRVNGSLALSRAIGDFEYKKDSSLPPEKQIVTAFPDVVIHNIDPDDEFLILACDGIWDCKSSQQVVEFVR 249          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PP2C2_CAEEL (Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans GN=T23F11.1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = -1
Query:  389 AEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 721
            A  L+ DH+PS E E  RI   GG+V+      RV G+LA+SRALGD   K         Q + A P+    ++ P++EF++LA DG+WD ++NQE +D  R   +  +  +P   C++L
Sbjct:  147 ARPLSFDHKPSHETEARRIIAAGGWVEFN----RVNGNLALSRALGDFAFKNCDTKPAEEQIVTAFPDVITDKLTPDHEFIVLACDGIWDVMTNQEVVDFVRE--KLAEKRDPQSICEEL 260          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = -1
Query:  437 LAEALTSDHRPSREDEKSRIETMGGYVDLCHGTW-RVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPF 724
            +A+ L+ DH P++E  +  IE  GG+V    G   RV G LAV+RA GDR LK+ + +EP+     I    +FLILASDGLW  +SNQEA+D  + F
Sbjct:  164 VAKQLSVDHEPNKE--RHSIEKKGGFVSNLPGDVPRVDGQLAVARAFGDRSLKKHLSSEPDVVEEPIDENTDFLILASDGLWKVMSNQEAVDEIKDF 258          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  389 LAEALTSDHRPSREDEKSRIETMGGYVDLCHGTW-RVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 724
            +A  L+ DH PS+E ++  IE+ GG+V    G   RV G LAV+RA GD+ LK  + ++P+ +   I  E EF++ ASDG+W  +SNQEA+D+ +         +P  A K+L
Sbjct:  154 VASQLSVDHEPSKEQKE--IESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSDPDIRDENIDHETEFILFASDGVWKVMSNQEAVDLIK------SIKDPQAAAKEL 258          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.977e-13
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = -1
Query:  389 LTSDHRPSREDEKSRIETMGGYVDLCHGTW-RVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 712
            +T DH P    E+  IE  GG+V    G   RV G LAVSRA GD+ LK  + ++P+ K   I    + L+LASDGLW  ++NQEAIDIAR         +P+ A K+L
Sbjct:  161 MTIDHEP--HTERLSIEGKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKTHLRSDPDVKDSSIDDHTDVLVLASDGLWKVMANQEAIDIARRI------KDPLKAAKEL 261          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = -1
Query:  452 LAEALTSDHRPSREDEKSRIETMGGYVDLCHGTW-RVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAID 724
            +A  L+ DH PS+E  K  IE+ GG+V    G   RV G LAV+RA GD+ LK  + +EP+     I    EF++ ASDG+W  +SNQEA+D
Sbjct:  158 VAHQLSVDHEPSKE--KKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKLHLSSEPDITHQTIDDHTEFILFASDGIWKVLSNQEAVD 247          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C51_ARATH (Probable protein phosphatase 2C 51 OS=Arabidopsis thaliana GN=At3g63340 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = -1
Query:  449 RRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQW-IIAEPETKIIR-IKPEYEFLILASDGLWDKVSNQEAIDI 730
            R +A+ LT DH P+REDEK R+E  GGYV    G  RV G L VSRA+GD   + + +I+ PE    + +     FL+++SDG+++K+  QE  D+
Sbjct:  304 RFIAKELTKDHHPNREDEKIRVEAAGGYVTEWAGVPRVNGQLTVSRAIGDLTYRSYGVISAPEVMDWQPLVANDSFLVVSSDGIFEKLEVQEVCDL 399          
The following BLAST results are available for this feature:
BLAST of CX296771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
PPM1E_MOUSE3.050e-1439.45Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE... [more]
P2C24_ARATH3.050e-1450.00Probable protein phosphatase 2C 24 OS=Arabidopsis ... [more]
PPM1E_HUMAN3.983e-1438.53Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE... [more]
PP2C2_SCHPO5.202e-1443.14Protein phosphatase 2C homolog 2 OS=Schizosaccharo... [more]
PP2C2_CAEEL6.794e-1437.50Probable protein phosphatase 2C T23F11.1 OS=Caenor... [more]
P2C62_ORYSJ8.873e-1446.39Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C20_ARATH8.873e-1439.82Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
P2C10_ARATH1.977e-1344.04Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
P2C58_ARATH4.404e-1345.65Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
P2C51_ARATH5.751e-1342.71Probable protein phosphatase 2C 51 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05802F05SK FerrChloL1 Citrus clementina cDNA clone C05802F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296771 ID=CX296771; Name=CX296771; organism=Citrus clementina; type=EST; length=736bp
TGCCGAATTCGGCACGAGGATTGAATCCTTTTATTTGTATTTGCTTTGAA
CTTGTACACTAAGTTTATGCTTAATTATTATAATAGCTGATAAGTAATGT
TACACAAAGAATGAACTTATTTACAAATCAAAGAACAAAAAATTATCTAT
GACTGGTATCAATTCTCTTCTTCAATTGTAGGTGGAAATGTCCTCCCTAG
ATGATTGATTAAAAGCTACTTGGAATAATTCACCTAATGGTAACTAAGCA
AGAGAAATTTTATTCGGCCTCGGCGTTAGTTCAATTTTCTACTGTATGTT
GTTTTGGGATGATTCAAAGATAGCGCCCCAGTTGAATCAGCATCACACTA
ACATCATCAACTGAGCCCCGTGAAACAGAGAGATCTACAAGCTTCTTACA
CGCTAACATTGGTTCTGGTGCATCAATGCTTTGGCAAAAAGGGCGAGCAA
TGTCAATTGCTTCTTGATTACTGACCTTATCCCAGAGGCCATCAGATGCT
AAGATTAGGAACTCGTATTCGGGTTTGATTCGAATGATTTTAGTCTCTGG
CTCGGCTATGATCCATTGCTTAAGGTGCCGATCCCCAAGGGCTCTAGACA
CAGCTAGAGACCCCTGAACTCTCCATGTACCGTGACATAAATCAACATAG
CCGCCCATCGTCTCAATTCTGCTCTTTTCATCTTCCCTAGAGGGCCGGTG
GTCTGAAGTGAGTGCCTCGGCAAGCCTCCTCTGCTC
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