CX296771

Overview
NameCX296771
Unique NameCX296771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5617 contig Ccv1_Contig5617:940..1675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C31_ARATH (Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = -1
Query:  389 ALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQ-GSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 715
            AL+  H  +  DE++R+   GG ++    TWRV    L V+R++GD  LK  + AEPE     +  + EFL++ASDGLWD ++++E I I R         EP +  K+L
Sbjct:  524 ALSKAHLATCIDERNRVIGEGGRIEWLVDTWRVAPAGLQVTRSIGDDDLKPAVTAEPEISETILSADDEFLVMASDGLWDVMNDEEVIGIIRD-----TVKEPSMCSKRL 628          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: Y0417_DROME (Probable protein phosphatase CG10417 OS=Drosophila melanogaster GN=CG10417 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = -1
Query:  389 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 712
            ++ DH+P  ++E SRI   GG V L     RV G L +SRALGD   K         Q I A P+ K + I PE EF++LA DG+W+ +S++E ++  R  C+  D  +    C++L
Sbjct:  427 MSIDHKPEDDEEASRIIKAGGRVTL---DGRVNGGLNLSRALGDHAYKTNVTLPAEEQMISALPDIKKLIITPEDEFMVLACDGIWNYMSSEEVVEFVR--CRLKDNKKLSTICEEL 538          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PP2C1_YEAST (Protein phosphatase 2C homolog 1 OS=Saccharomyces cerevisiae GN=PTC1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = -1
Query:  389 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 712
            LT DH+ S   E  R+E  GG +       RV G LAV+R+LGD+     ++  P T  + I  E +FLILA DGLWD + +Q+A ++ +      D  EP  A K L
Sbjct:  164 LTYDHKASDTLEMQRVEQAGGLIMKS----RVNGMLAVTRSLGDKFFDSLVVGSPFTTSVEITSEDKFLILACDGLWDVIDDQDACELIK------DITEPNEAAKVL 261          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C50_ARATH (Putative protein phosphatase 2C 50 OS=Arabidopsis thaliana GN=At3g63320 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  452 RRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQW-IIAEPETKIIR-IKPEYEFLILASDGLWDKVSNQEAID 730
            R +A+ LT DH P REDE  R++  GGYV    G  RV G LAVSR++GD   + + +I+ PE    + +     +L+++SDG+++K+  Q+A D
Sbjct:  239 RFIAKELTKDHHPDREDEMLRVKAAGGYVTKWAGVPRVNGQLAVSRSIGDLTYRSYGVISAPEVMDWQPLVANDSYLVVSSDGIFEKLEVQDACD 333          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = -1
Query:  413 QRRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQW------IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPE 733
            ++ +A  ++ DHRP+ + E  RI   GGY++  +    + G L+V+RALGD  +K        +IAEPE +   +  + EFLI+  DG+WD +S+Q A+ I R   +  D PE
Sbjct:  205 RKGVAVEMSRDHRPTYDAEHERITECGGYIEDGY----LNGVLSVTRALGDWDMKMPQGSRSPLIAEPEFQQTTLTEDDEFLIIGCDGIWDVMSSQHAVTIVRKGLRRHDDPE 313          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1B_BOVIN (Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 43/98 (43.88%), Postives = 53/98 (54.08%), Query Frame = -1
Query:  443 TSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIAR 709
            T DH+P    EK RI+  GG V +     RV GSLAVSRALGD   K         Q +  EPE   I    E EF+ILA DG+WD +SN+E  +  +
Sbjct:  166 TQDHKPCNPREKERIQNAGGSVMI----QRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEFVK 259          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 45/107 (42.06%), Postives = 57/107 (53.27%), Query Frame = -1
Query:  443 QRRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKII-RIKPEYEFLILASDGLWDKVSNQEAIDIAR 733
            + R     T DH+PS   EK RI+  GG V +     RV GSLAVSRALGD   K         Q +  EPE   I R + + +F+ILA DG+WD + N+E  D  R
Sbjct:  153 RNRKVHFFTQDHKPSNPLEKERIQNAGGSVMI----QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 45/107 (42.06%), Postives = 57/107 (53.27%), Query Frame = -1
Query:  443 QRRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKII-RIKPEYEFLILASDGLWDKVSNQEAIDIAR 733
            + R     T DH+PS   EK RI+  GG V +     RV GSLAVSRALGD   K         Q +  EPE   I R + + +F+ILA DG+WD + N+E  D  R
Sbjct:  153 RNRKVHFFTQDHKPSNPLEKERIQNAGGSVMI----QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 45/107 (42.06%), Postives = 57/107 (53.27%), Query Frame = -1
Query:  443 QRRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKII-RIKPEYEFLILASDGLWDKVSNQEAIDIAR 733
            + R     T DH+PS   EK RI+  GG V +     RV GSLAVSRALGD   K         Q +  EPE   I R + + +F+ILA DG+WD + N+E  D  R
Sbjct:  153 RNRKVHFFTQDHKPSNPLEKERIQNAGGSVMI----QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1A_HUMAN (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 45/107 (42.06%), Postives = 57/107 (53.27%), Query Frame = -1
Query:  443 QRRLAEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKII-RIKPEYEFLILASDGLWDKVSNQEAIDIAR 733
            + R     T DH+PS   EK RI+  GG V +     RV GSLAVSRALGD   K         Q +  EPE   I R + + +F+ILA DG+WD + N+E  D  R
Sbjct:  153 RNRKVHFFTQDHKPSNPLEKERIQNAGGSVMI----QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          
The following BLAST results are available for this feature:
BLAST of CX296771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
P2C31_ARATH1.085e-1137.27Protein kinase and PP2C-like domain-containing pro... [more]
Y0417_DROME1.417e-1137.61Probable protein phosphatase CG10417 OS=Drosophila... [more]
PP2C1_YEAST1.417e-1138.89Protein phosphatase 2C homolog 1 OS=Saccharomyces ... [more]
P2C50_ARATH1.850e-1140.00Putative protein phosphatase 2C 50 OS=Arabidopsis ... [more]
P2C02_ORYSJ1.850e-1136.28Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]
PPM1B_BOVIN2.416e-1143.88Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2... [more]
PPM1A_RAT2.416e-1142.06Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_RABIT2.416e-1142.06Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]
PPM1A_MOUSE2.416e-1142.06Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]
PPM1A_HUMAN2.416e-1142.06Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE... [more]

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Properties
Property NameValue
Genbank descriptionC05802F05SK FerrChloL1 Citrus clementina cDNA clone C05802F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296771 ID=CX296771; Name=CX296771; organism=Citrus clementina; type=EST; length=736bp
TGCCGAATTCGGCACGAGGATTGAATCCTTTTATTTGTATTTGCTTTGAA
CTTGTACACTAAGTTTATGCTTAATTATTATAATAGCTGATAAGTAATGT
TACACAAAGAATGAACTTATTTACAAATCAAAGAACAAAAAATTATCTAT
GACTGGTATCAATTCTCTTCTTCAATTGTAGGTGGAAATGTCCTCCCTAG
ATGATTGATTAAAAGCTACTTGGAATAATTCACCTAATGGTAACTAAGCA
AGAGAAATTTTATTCGGCCTCGGCGTTAGTTCAATTTTCTACTGTATGTT
GTTTTGGGATGATTCAAAGATAGCGCCCCAGTTGAATCAGCATCACACTA
ACATCATCAACTGAGCCCCGTGAAACAGAGAGATCTACAAGCTTCTTACA
CGCTAACATTGGTTCTGGTGCATCAATGCTTTGGCAAAAAGGGCGAGCAA
TGTCAATTGCTTCTTGATTACTGACCTTATCCCAGAGGCCATCAGATGCT
AAGATTAGGAACTCGTATTCGGGTTTGATTCGAATGATTTTAGTCTCTGG
CTCGGCTATGATCCATTGCTTAAGGTGCCGATCCCCAAGGGCTCTAGACA
CAGCTAGAGACCCCTGAACTCTCCATGTACCGTGACATAAATCAACATAG
CCGCCCATCGTCTCAATTCTGCTCTTTTCATCTTCCCTAGAGGGCCGGTG
GTCTGAAGTGAGTGCCTCGGCAAGCCTCCTCTGCTC
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