CX296771

Overview
NameCX296771
Unique NameCX296771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPMBL_HUMAN (Probable protein phosphatase 1B-like OS=Homo sapiens PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 48/116 (41.38%), Postives = 60/116 (51.72%), Query Frame = -1
Query:  389 TSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 709
            T DHRP R  E+ RI   GG +       RV+GSLAVSRALGD   K         Q + AEPE   +  + E EF++LASDG+WD VS      +     +   APE  L C +L
Sbjct:  197 TEDHRPLRPRERERIHAAGGTIR----RRRVEGSLAVSRALGDFTYKEAPGRPPELQLVSAEPEVAALARQAEDEFMLLASDGVWDTVSGAALAGLVASRLRLGLAPE--LLCAQL 306          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 43/98 (43.88%), Postives = 53/98 (54.08%), Query Frame = -1
Query:  443 TSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIAR 709
            T DH+P    EK RI+  GG V +     RV GSLAVSRALGD   K         Q +  EPE   I    E EF+ILA DG+WD +SN+E  +  +
Sbjct:  166 TQDHKPCNPREKERIQNAGGSVMI----QRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVK 259          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1A_BOVIN (Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 44/99 (44.44%), Postives = 55/99 (55.56%), Query Frame = -1
Query:  443 TSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKII-RIKPEYEFLILASDGLWDKVSNQEAIDIAR 709
            T DH+PS   EK RI+  GG V +     RV GSLAVSRALGD   K         Q +  EPE   I R + + +F+ILA DG+WD + N+E  D  R
Sbjct:  161 TQDHKPSNPLEKERIQNAGGSVMI----QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PP2C2_YEAST (Protein phosphatase 2C homolog 2 OS=Saccharomyces cerevisiae GN=PTC2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = -1
Query:  449 AEALTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEY----------EFLILASDGLWDKVSNQEAIDI 721
            A+AL+ DH+P+   EKSRI    G+V++     RV G+LA+SRA+GD   K      PE +I+   P+           EF+ILA DG+WD +++Q+ +D+
Sbjct:  152 AKALSYDHKPTLASEKSRIVAADGFVEMD----RVNGNLALSRAIGDFEFKSNPKLGPEEQIVTCVPDILEHSLDYDRDEFVILACDGIWDCLTSQDCVDL 248          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C04_ORYSJ (Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica GN=Os01g0541900 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = -1
Query:  389 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRV-QGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 712
            +T DH  S   E+ RI   G  V     TWRV   +L V+R++GD  LK  + A+PE     + P+ EFL++ASDGLWD +SN++ + I +         EP +  K+L
Sbjct:  524 MTRDHVASCPKERERIVKEGTEVKWQIDTWRVGAAALQVTRSIGDDDLKPAVTAQPEVIETILSPDDEFLVMASDGLWDVMSNEDVLSIIKD-----TVKEPGMCSKRL 627          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = -1
Query:  449 AEALTSDHRPSREDEKSRIETMGG----YVDLCHGTWRVQGSLAVSRALGDRHLKQW---------------------IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDI 721
            A  L+S+H  S E  +  + ++       V L H  WRV+G + VSR++GD +LK+                      + AEP   + +I PE +FLI ASDGLW+ +SNQEA+DI
Sbjct:  188 AVQLSSEHNASLESVREELRSLHPNDPQIVVLKHKVWRVKGIIQVSRSIGDAYLKKAEFNREPLLAKFRVPEVFHKPILRAEPAITVHKIHPEDQFLIFASDGLWEHLSNQEAVDI 303          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPMBL_MOUSE (Probable protein phosphatase 1B-like OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 42/92 (45.65%), Postives = 52/92 (56.52%), Query Frame = -1
Query:  461 TSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQ---------WIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQE 709
            T DHRP R  E+ RI   GG V       RV+GSLAVSRALGD   KQ          + AEPE   +  + E EF++LASDG+WD +S  +
Sbjct:  190 TEDHRPHRPRERERIHDAGGTVR----RRRVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFVLLASDGVWDALSGAD 277          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: PPM1B_MOUSE (Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 42/98 (42.86%), Postives = 53/98 (54.08%), Query Frame = -1
Query:  443 TSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLK---------QWIIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIAR 709
            T DH+P    EK RI+  GG V +     RV GSLAVSRALGD   K         Q +  EPE   I    E EF++LA DG+WD +SN+E  +  +
Sbjct:  166 TQDHKPCNPVEKERIQNAGGSVMI----QRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEELCEFVK 259          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = -1
Query:  389 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQW-----------IIAEPETKIIRIKPEYEFLILASDGLWDKVSNQEAIDIARPFCQSIDAPEPMLACKKL 712
            ++ DH+P    E+ RIE  GG+V   +    + G L V+RALGD H++             +IAEPE    ++  E EFLI+  DG+WD   +Q A+D AR   Q  +  +P++  K+L
Sbjct:  224 MSRDHKPMSSKERRRIEASGGHVFDGY----LNGQLNVARALGDFHMEGMKKKKDGSDCGPLIAEPELMTTKLTEEDEFLIIGCDGVWDVFMSQNAVDFARRRLQ--EHNDPVMCSKEL 336          
BLAST of CX296771 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = -1
Query:  431 LTSDHRPSREDEKSRIETMGGYVDLCHGTWRVQGSLAVSRALGDRHLKQWIIAEPETKIIRIKPEY---------EFLILASDGLWDKVSNQEAIDIARPFCQ 712
            L+ DH+P  E E+ RI   GG++ +     R+ GSL ++RA+GD   KQ     PE +I+   P+          +FL+LA DG+WD +S+Q+ +D      Q
Sbjct:  194 LSRDHKPELEAERDRIVKAGGFIHM----GRINGSLNLTRAIGDMEFKQNKFLPPEKQIVTANPDINVVELCDDDDFLVLACDGIWDCMSSQQLVDFIHEHIQ 292          
The following BLAST results are available for this feature:
BLAST of CX296771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
PPMBL_HUMAN3.156e-1141.38Probable protein phosphatase 1B-like OS=Homo sapie... [more]
PPM1B_HUMAN3.156e-1143.88Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]
PPM1A_BOVIN4.122e-1144.44Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2... [more]
PP2C2_YEAST4.122e-1138.61Protein phosphatase 2C homolog 2 OS=Saccharomyces ... [more]
P2C04_ORYSJ4.122e-1137.61Protein kinase and PP2C-like domain-containing pro... [more]
P2C38_ARATH5.383e-1136.21Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
PPMBL_MOUSE7.030e-1145.65Probable protein phosphatase 1B-like OS=Mus muscul... [more]
PPM1B_MOUSE7.030e-1142.86Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE... [more]
P2C22_ARATH7.030e-1135.29Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]
P2C11_ORYSJ7.030e-1134.95Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05802F05SK FerrChloL1 Citrus clementina cDNA clone C05802F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296771 ID=CX296771; Name=CX296771; organism=Citrus clementina; type=EST; length=736bp
TGCCGAATTCGGCACGAGGATTGAATCCTTTTATTTGTATTTGCTTTGAA
CTTGTACACTAAGTTTATGCTTAATTATTATAATAGCTGATAAGTAATGT
TACACAAAGAATGAACTTATTTACAAATCAAAGAACAAAAAATTATCTAT
GACTGGTATCAATTCTCTTCTTCAATTGTAGGTGGAAATGTCCTCCCTAG
ATGATTGATTAAAAGCTACTTGGAATAATTCACCTAATGGTAACTAAGCA
AGAGAAATTTTATTCGGCCTCGGCGTTAGTTCAATTTTCTACTGTATGTT
GTTTTGGGATGATTCAAAGATAGCGCCCCAGTTGAATCAGCATCACACTA
ACATCATCAACTGAGCCCCGTGAAACAGAGAGATCTACAAGCTTCTTACA
CGCTAACATTGGTTCTGGTGCATCAATGCTTTGGCAAAAAGGGCGAGCAA
TGTCAATTGCTTCTTGATTACTGACCTTATCCCAGAGGCCATCAGATGCT
AAGATTAGGAACTCGTATTCGGGTTTGATTCGAATGATTTTAGTCTCTGG
CTCGGCTATGATCCATTGCTTAAGGTGCCGATCCCCAAGGGCTCTAGACA
CAGCTAGAGACCCCTGAACTCTCCATGTACCGTGACATAAATCAACATAG
CCGCCCATCGTCTCAATTCTGCTCTTTTCATCTTCCCTAGAGGGCCGGTG
GTCTGAAGTGAGTGCCTCGGCAAGCCTCCTCTGCTC
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