CX296773
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12 Identity = 65/199 (32.66%), Postives = 82/199 (41.21%), Query Frame = 1 Query: 112 PTRDSDRLVWFP--GATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE---LDPVKRLYPGGYFDPLGLASDP 660 P +DR+++ PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L GV W AG EG YLG P ++ IW ++V+++G +E R A + V LYPGG FDPLGLA DP Sbjct: 44 PWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 199
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12 Identity = 65/199 (32.66%), Postives = 82/199 (41.21%), Query Frame = 1 Query: 112 PTRDSDRLVWFP--GATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE---LDPVKRLYPGGYFDPLGLASDP 660 P +DR+++ PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L GV W AG EG YLG P ++ IW ++V+++G +E R A + V LYPGG FDPLGLA DP Sbjct: 48 PWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDP 203
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11 Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 1 Query: 370 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVIVIGYIE-YQRNAE----LDPVKRLYPGGYFDPLGLASDP 660 R+RE ELIH RWA+LG LG + E L+ A W AG +G +YLG S+ + ++V+++G E Y+ N LD + LYPGG FDPLGLA DP Sbjct: 78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDP 191
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11 Identity = 65/200 (32.50%), Postives = 81/200 (40.50%), Query Frame = 1 Query: 112 PTRDSDRLVWFP--GATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDP 660 P SDR+ + PP +L G GD G+D GL E A+N RE E+IH RWAMLG LG + E L GV W AG EG YLG P +++ I +VI++G +E R A P+ LYPGG FDPLGLA+DP Sbjct: 48 PWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDP 204
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11 Identity = 50/113 (44.25%), Postives = 60/113 (53.10%), Query Frame = 1 Query: 370 RFRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQP---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDP 660 R R E+IHGRWAMLG LG + E L GV W AG EG YLG P S+ ++ +V+++G +E R LD V LYPGG YFDPLGLA DP Sbjct: 94 RNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDP 206
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11 Identity = 49/114 (42.98%), Postives = 59/114 (51.75%), Query Frame = 1 Query: 370 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDP 660 R RE E+IH RWAMLG LG E L GV W AG EG YLG P +++ I +V+++G++E R LDP LYPGG FDPLGLA DP Sbjct: 93 RNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDP 203
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11 Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 370 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDP 660 R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P ++ IW ++V+++G++E R + + ++YPGG FDPLGLA DP Sbjct: 91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDP 201
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11 Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 370 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDP 660 R RE E+IH RWAMLG LG + E L+ GV W AG EG YLG P ++ IW ++V+++G++E R + + ++YPGG FDPLGLA DP Sbjct: 91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDP 201
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11 Identity = 49/112 (43.75%), Postives = 60/112 (53.57%), Query Frame = 1 Query: 370 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDP 660 R RE E+IH RWAMLG LG + E L GV W AG +G YLG P ++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDP 205
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11 Identity = 49/112 (43.75%), Postives = 60/112 (53.57%), Query Frame = 1 Query: 370 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDP 660 R RE E+IH RWAMLG LG + E L GV W AG +G YLG P ++ IW +VI++G +E R A P+ LYPGG FDPLGLA+DP Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDP 205 The following BLAST results are available for this feature:
BLAST of CX296773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296773 ID=CX296773; Name=CX296773; organism=Citrus clementina; type=EST; length=726bpback to top |