CX296773

Overview
NameCX296773
Unique NameCX296773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13572 contig Ccv1_Contig13572:142..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 65/199 (32.66%), Postives = 82/199 (41.21%), Query Frame = 1
Query:  112 PTRDSDRLVWFP--GATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE---LDPVKRLYPGGYFDPLGLASDP 660
            P   +DR+++       PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      ++  IW ++V+++G +E  R A     + V  LYPGG FDPLGLA DP
Sbjct:   44 PWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 199          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 65/199 (32.66%), Postives = 82/199 (41.21%), Query Frame = 1
Query:  112 PTRDSDRLVWFP--GATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAE---LDPVKRLYPGGYFDPLGLASDP 660
            P   +DR+++       PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      ++  IW ++V+++G +E  R A     + V  LYPGG FDPLGLA DP
Sbjct:   48 PWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDP 203          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 46/114 (40.35%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  370 RFRECELIHGRWAMLGTLGAIAVEALTGVA--------WQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVIVIGYIE-YQRNAE----LDPVKRLYPGGYFDPLGLASDP 660
            R+RE ELIH RWA+LG LG +  E L+  A        W  AG     +G  +YLG        S+   + ++V+++G  E Y+ N      LD +  LYPGG FDPLGLA DP
Sbjct:   78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDP 191          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 65/200 (32.50%), Postives = 81/200 (40.50%), Query Frame = 1
Query:  112 PTRDSDRLVWFP--GATPPEWLDGTMVGDRGFDPLGLGKPTEYLQYDFDSLDQNLAKNDVGELLGVITDSGELQPTPLQPYTEVFGLQRFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDP 660
            P   SDR+ +       PP +L G   GD G+D  GL    E             A+N                                RE E+IH RWAMLG LG +  E L   GV      W  AG     EG   YLG P      +++ I   +VI++G +E  R A   P+      LYPGG FDPLGLA+DP
Sbjct:   48 PWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFARN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDP 204          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 50/113 (44.25%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  370 RFRECELIHGRWAMLGTLGAIAVEAL---TGV-----AWQDAGKVELVEGS-SYLGQP---LPFSLTTLIWIEVIVIGYIEYQRNAELDPV---KRLYPGG-YFDPLGLASDP 660
            R R  E+IHGRWAMLG LG +  E L    GV      W  AG     EG   YLG P      S+  ++  +V+++G +E  R   LD V     LYPGG YFDPLGLA DP
Sbjct:   94 RNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDP 206          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 49/114 (42.98%), Postives = 59/114 (51.75%), Query Frame = 1
Query:  370 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVIVIGYIEYQR------NAELDPVKRLYPGGYFDPLGLASDP 660
            R RE E+IH RWAMLG LG    E L   GV      W  AG     EG   YLG P      +++ I   +V+++G++E  R         LDP   LYPGG FDPLGLA DP
Sbjct:   93 RNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAFDPLGLADDP 203          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  370 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDP 660
            R RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      ++  IW ++V+++G++E  R       + + ++YPGG FDPLGLA DP
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDP 201          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  370 RFRECELIHGRWAMLGTLGAIAVEALT--GV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQR---NAELDPVKRLYPGGYFDPLGLASDP 660
            R RE E+IH RWAMLG LG +  E L+  GV      W  AG     EG   YLG P      ++  IW ++V+++G++E  R       + + ++YPGG FDPLGLA DP
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDP 201          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 49/112 (43.75%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  370 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDP 660
            R RE E+IH RWAMLG LG +  E L   GV      W  AG     +G   YLG P      ++  IW  +VI++G +E  R A   P+      LYPGG FDPLGLA+DP
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDP 205          
BLAST of CX296773 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 49/112 (43.75%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  370 RFRECELIHGRWAMLGTLGAIAVEAL--TGV-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDP 660
            R RE E+IH RWAMLG LG +  E L   GV      W  AG     +G   YLG P      ++  IW  +VI++G +E  R A   P+      LYPGG FDPLGLA+DP
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDP 205          
The following BLAST results are available for this feature:
BLAST of CX296773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CB22_ORYSJ8.115e-1232.66Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ8.115e-1232.66Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_DUNTE1.384e-1140.35Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SINAL3.084e-1132.50Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_HORVU4.027e-1144.25Chlorophyll a-b binding protein of LHCII type III,... [more]
CB215_PEA4.027e-1142.98Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_ORYSJ5.260e-1141.44Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI5.260e-1141.44Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ARATH5.260e-1143.75Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH5.260e-1143.75Chlorophyll a-b binding protein 165/180, chloropla... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802F07SK FerrChloL1 Citrus clementina cDNA clone C05802F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296773 ID=CX296773; Name=CX296773; organism=Citrus clementina; type=EST; length=726bp
CATTTCTTCGGGACGAGAATTCATGGTCCTGTCGTGAAACAAAGATCGGG
AAAATTCCAAGCCAGGTTCAGCTTTCGCAAGAAAAAATCCCCACCAGCCA
AAAAGGCCAGGCCTACACGAGACTCCGACCGGCTTGTCTGGTTCCCCGGC
GCCACCCCGCCGGAATGGCTCGACGGGACAATGGTGGGTGACCGTGGGTT
CGACCCGTTGGGGCTGGGGAAGCCAACAGAGTACTTGCAGTATGATTTTG
ACTCGTTGGATCAGAACTTGGCCAAGAACGATGTCGGCGAGCTTCTCGGA
GTGATTACTGATTCCGGGGAGCTGCAGCCGACGCCGCTGCAGCCGTACAC
GGAGGTATTTGGGCTGCAGAGGTTTAGAGAATGTGAGCTGATTCATGGAA
GGTGGGCCATGTTGGGTACCCTTGGCGCCATTGCTGTTGAAGCTCTCACT
GGTGTCGCATGGCAGGATGCTGGAAAGGTGGAGCTGGTGGAGGGTTCATC
TTATCTTGGCCAACCACTTCCATTTTCATTAACAACATTGATTTGGATTG
AAGTTATTGTGATTGGGTACATAGAATATCAAAGAAATGCAGAGCTTGAT
CCAGTGAAAAGACTATACCCTGGTGGGTATTTTGATCCTCTTGGCTTGGC
CTCAGATCCTGGGAAGCTTGAAATCTTCATTGGCTGAAATCAGCACGCTC
GTCTAGCATGGTAGCATTTTTATCTT
back to top