CX296779
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_NITHX (Bifunctional enzyme ispD/ispF OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=ispDF PE=3 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30 Identity = 66/146 (45.21%), Postives = 91/146 (62.33%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIA 670 R G G+D+H G +++ G+ VPH RG AHSDGDV LH +VDAILGAL DIG FP SDP+WKGA S F+K AV + G I NL+ T+I +RPK+ P ++T+R ++E+ G + + + A T E++ G IA Sbjct: 235 RTGTGYDVHAFGDGDHVMLCGVKVPHNRGFLAHSDGDVGLHALVDAILGALADGDIGSHFPPSDPQWKGAASDKFLKYAVDRVAARGGRIANLEVTMICERPKIGPLRDTMRARIAEITGVAISRIAVKATTSERLGFTGREEGIA 380
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CHLPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=ispF PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30 Identity = 62/153 (40.52%), Postives = 94/153 (61.44%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R G G D+H G L+IGG+ +P +G + HSD DVLLH V DA+LGA L DIG FP++ ++K S + +K +L+D+ G+ I N+DA L+L+ PK++ Y +R N++ LG + V++ A T+EK+ +G AAH V L+ Sbjct: 2 RTGIGIDVHPFAEGRKLVIGGVEIPSAKGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSQEFKDIDSMILLKHVKKLLDKEGFRIVNIDAMLLLEAPKIASYINEMRKNIARCLGLELNAVSVKATTNEKLGYIGREEGAAAHAVCLI 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_BRUSU (Bifunctional enzyme ispD/ispF OS=Brucella suis GN=ispDF PE=3 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30 Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673 R G+G+D+H EPG + + G+ +PHE HSD DV LH + DA+L G DIG FP SD +WKGA S +FI+ A +++ EAG I N+D TLI + PK+ P++ + L ++LG V++ A T+EK+ +G IAA Sbjct: 230 RTGNGYDVHSFEPGDHVTLCGVKIPHEAKLNGHSDADVALHALTDALLATRGAGDIGTHFPPSDSQWKGAASRIFIEHAAKIVREAGGRIANVDVTLISEAPKIGPHRAAMTQALCDMLGIAADRVSIKATTNEKLGFVGRREGIAA 376
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PSEHT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ispF PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.035e-29 Identity = 61/153 (39.87%), Postives = 97/153 (63.40%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+GHGFD+H+ PL IGG + + +G AHSDGDV +H + DAILGAL + DIG+ FPD+ +++ S + ++ V L E GY +GN D T++ Q PK+ P+ + +R+NL+ L + + +N+ A T EK+ G I++H V+++ Sbjct: 3 RIGHGFDVHKFGGVGPLTIGGEKIDYPQGFLAHSDGDVAIHALCDAILGALAMGDIGKHFPDTASEYENIDSRILLRHVVSLAKEQGYVLGNGDVTIVAQAPKMLPHIQAMRSNLASDLNCELSQINVKATTTEKLGFEGRKEGISSHAVVIM 155
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_RHILO (Bifunctional enzyme ispD/ispF OS=Rhizobium loti GN=ispDF PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.035e-29 Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673 R G+G+D+H EPG + + G+ +PH++ HSD DV LH + DA+L G DIG FP SDP+WKGA S +F++ A +++ + G I N D TLI + P++ P++E + LS +LG +++ A T+EK+ +G IAA Sbjct: 247 RTGNGYDVHAFEPGDHVTLCGVAIPHDKKLSGHSDADVGLHALTDALLATCGAGDIGTHFPPSDPQWKGAASRIFVEHAAKVVRQRGGRIANADITLICEAPRVGPHREAMTAALSRMLGISADRISIKATTNEKLGFVGREEGIAA 393
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_OCHA4 (Bifunctional enzyme ispD/ispF OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=ispDF PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.035e-29 Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673 R G+G+D+H EPG + + G+ +PHE HSD DV LH + DA+L G DIG FP SDP+WKGA S +FI+ A ++ EAG I N+D T I + PK+ P++ + L ++LG V++ A T+EK+ +G IAA Sbjct: 247 RTGNGYDVHSFEPGDHVTLCGVKIPHEAKLNGHSDADVGLHALTDALLATRGAGDIGTHFPPSDPQWKGAASRIFIEHAANIVREAGGRIANVDVTFISEAPKIGPHRAAMTEALCDMLGIAADRVSIKATTNEKLGFVGRREGIAA 393
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMFF (Bifunctional enzyme ispD/ispF OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=ispDF PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.035e-29 Identity = 60/151 (39.74%), Postives = 97/151 (64.24%), Query Frame = 2 Query: 239 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 G+GFD+H + G + + G+ +P+ + AHSDGDV LH + DA+LGA PDIG+++PD+D K+K S + ++ +V L+ G++I N D T+I Q PK+SPYK+ + ++++LG VN+ A T E + +G N IAA+ ++ L Sbjct: 213 GNGFDVHAFKEGDFITLCGVKIPYSKAFIAHSDGDVALHALCDALLGAASAPDIGELYPDNDSKFKDIDSKILLQNSVNLIRSIGFDIINADITIIAQSPKISPYKDAMAKIVADILGIPLHKVNIKATTTEHLGFIGRNEGIAANAIVNL 363
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_RHOPS (Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas palustris (strain BisB5) GN=ispDF PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29 Identity = 66/147 (44.90%), Postives = 90/147 (61.22%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673 R G G+D+H G + + G+ VPH RG AHSDGDV LH +VDAILGAL DIG FP +DP+WKGA S F+K AV + G I NL+ T+I +RPK+ P +E +R ++E+ G + + + A T E++ G IAA Sbjct: 235 RTGTGYDVHAFGDGDHVWLCGLKVPHNRGFLAHSDGDVGLHALVDAILGALADGDIGSHFPPTDPQWKGAASDKFLKYAVERVAARGGRIANLEVTMICERPKIGPLREAMRARIAEITGLPVSRIAVKATTSERLGFTGREEGIAA 381
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_LEPIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira interrogans GN=ispF PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.765e-29 Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEPGY--PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 +R+G+G D H+LE PLI+GGI E HSD D++LH + DAILGAL L DIGQ FPD+DP K S + + + + LM E +++ N+D T+I +RPK++P K+ I +LS LL +++ A T EK+ +LG I ILL Sbjct: 2 YRIGNGIDFHKLEINLNRPLILGGIECESEFALVGHSDADIILHAISDAILGALALGDIGQYFPDTDPSLKNIDSKIILVKCLELMKEKNFDLVNIDCTVIGERPKITPLKDRITKSLSNLLNLPLDCISVKATTTEKMGALGRQEGIGTFCSILL 157
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_LEPIC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispF PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.765e-29 Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEPGY--PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 +R+G+G D H+LE PLI+GGI E HSD D++LH + DAILGAL L DIGQ FPD+DP K S + + + + LM E +++ N+D T+I +RPK++P K+ I +LS LL +++ A T EK+ +LG I ILL Sbjct: 2 YRIGNGIDFHKLEINLNRPLILGGIECESEFALVGHSDADIILHAISDAILGALALGDIGQYFPDTDPSLKNIDSKIILVKCLELMKEKNFDLVNIDCTVIGERPKIAPLKDRITKSLSNLLNLPLDCISVKATTTEKMGALGRQEGIGTFCSILL 157 The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bpback to top |