CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_NITHX (Bifunctional enzyme ispD/ispF OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=ispDF PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.065e-30
Identity = 66/146 (45.21%), Postives = 91/146 (62.33%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIA 670
            R G G+D+H    G  +++ G+ VPH RG  AHSDGDV LH +VDAILGAL   DIG  FP SDP+WKGA S  F+K AV  +   G  I NL+ T+I +RPK+ P ++T+R  ++E+ G   + + + A T E++   G    IA
Sbjct:  235 RTGTGYDVHAFGDGDHVMLCGVKVPHNRGFLAHSDGDVGLHALVDAILGALADGDIGSHFPPSDPQWKGAASDKFLKYAVDRVAARGGRIANLEVTMICERPKIGPLRDTMRARIAEITGVAISRIAVKATTSERLGFTGREEGIA 380          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CHLPD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 62/153 (40.52%), Postives = 94/153 (61.44%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R G G D+H    G  L+IGG+ +P  +G + HSD DVLLH V DA+LGA  L DIG  FP++  ++K   S + +K   +L+D+ G+ I N+DA L+L+ PK++ Y   +R N++  LG +   V++ A T+EK+  +G     AAH V L+
Sbjct:    2 RTGIGIDVHPFAEGRKLVIGGVEIPSAKGLDGHSDADVLLHAVSDALLGAAALGDIGLHFPNTSQEFKDIDSMILLKHVKKLLDKEGFRIVNIDAMLLLEAPKIASYINEMRKNIARCLGLELNAVSVKATTNEKLGYIGREEGAAAHAVCLI 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_BRUSU (Bifunctional enzyme ispD/ispF OS=Brucella suis GN=ispDF PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R G+G+D+H  EPG  + + G+ +PHE     HSD DV LH + DA+L   G  DIG  FP SD +WKGA S +FI+ A +++ EAG  I N+D TLI + PK+ P++  +   L ++LG     V++ A T+EK+  +G    IAA
Sbjct:  230 RTGNGYDVHSFEPGDHVTLCGVKIPHEAKLNGHSDADVALHALTDALLATRGAGDIGTHFPPSDSQWKGAASRIFIEHAAKIVREAGGRIANVDVTLISEAPKIGPHRAAMTQALCDMLGIAADRVSIKATTNEKLGFVGRREGIAA 376          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_PSEHT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ispF PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.035e-29
Identity = 61/153 (39.87%), Postives = 97/153 (63.40%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHGFD+H+     PL IGG  + + +G  AHSDGDV +H + DAILGAL + DIG+ FPD+  +++   S + ++  V L  E GY +GN D T++ Q PK+ P+ + +R+NL+  L  + + +N+ A T EK+   G    I++H V+++
Sbjct:    3 RIGHGFDVHKFGGVGPLTIGGEKIDYPQGFLAHSDGDVAIHALCDAILGALAMGDIGKHFPDTASEYENIDSRILLRHVVSLAKEQGYVLGNGDVTIVAQAPKMLPHIQAMRSNLASDLNCELSQINVKATTTEKLGFEGRKEGISSHAVVIM 155          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_RHILO (Bifunctional enzyme ispD/ispF OS=Rhizobium loti GN=ispDF PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.035e-29
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R G+G+D+H  EPG  + + G+ +PH++    HSD DV LH + DA+L   G  DIG  FP SDP+WKGA S +F++ A +++ + G  I N D TLI + P++ P++E +   LS +LG     +++ A T+EK+  +G    IAA
Sbjct:  247 RTGNGYDVHAFEPGDHVTLCGVAIPHDKKLSGHSDADVGLHALTDALLATCGAGDIGTHFPPSDPQWKGAASRIFVEHAAKVVRQRGGRIANADITLICEAPRVGPHREAMTAALSRMLGISADRISIKATTNEKLGFVGREEGIAA 393          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_OCHA4 (Bifunctional enzyme ispD/ispF OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=ispDF PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.035e-29
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R G+G+D+H  EPG  + + G+ +PHE     HSD DV LH + DA+L   G  DIG  FP SDP+WKGA S +FI+ A  ++ EAG  I N+D T I + PK+ P++  +   L ++LG     V++ A T+EK+  +G    IAA
Sbjct:  247 RTGNGYDVHSFEPGDHVTLCGVKIPHEAKLNGHSDADVGLHALTDALLATRGAGDIGTHFPPSDPQWKGAASRIFIEHAANIVREAGGRIANVDVTFISEAPKIGPHRAAMTEALCDMLGIAADRVSIKATTNEKLGFVGRREGIAA 393          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMFF (Bifunctional enzyme ispD/ispF OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=ispDF PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.035e-29
Identity = 60/151 (39.74%), Postives = 97/151 (64.24%), Query Frame = 2
Query:  239 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            G+GFD+H  + G  + + G+ +P+ +   AHSDGDV LH + DA+LGA   PDIG+++PD+D K+K   S + ++ +V L+   G++I N D T+I Q PK+SPYK+ +   ++++LG     VN+ A T E +  +G N  IAA+ ++ L
Sbjct:  213 GNGFDVHAFKEGDFITLCGVKIPYSKAFIAHSDGDVALHALCDALLGAASAPDIGELYPDNDSKFKDIDSKILLQNSVNLIRSIGFDIINADITIIAQSPKISPYKDAMAKIVADILGIPLHKVNIKATTTEHLGFIGRNEGIAANAIVNL 363          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_RHOPS (Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas palustris (strain BisB5) GN=ispDF PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29
Identity = 66/147 (44.90%), Postives = 90/147 (61.22%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R G G+D+H    G  + + G+ VPH RG  AHSDGDV LH +VDAILGAL   DIG  FP +DP+WKGA S  F+K AV  +   G  I NL+ T+I +RPK+ P +E +R  ++E+ G   + + + A T E++   G    IAA
Sbjct:  235 RTGTGYDVHAFGDGDHVWLCGLKVPHNRGFLAHSDGDVGLHALVDAILGALADGDIGSHFPPTDPQWKGAASDKFLKYAVERVAARGGRIANLEVTMICERPKIGPLREAMRARIAEITGLPVSRIAVKATTSERLGFTGREEGIAA 381          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_LEPIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira interrogans GN=ispF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.765e-29
Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  230 FRVGHGFDLHRLEPGY--PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +R+G+G D H+LE     PLI+GGI    E     HSD D++LH + DAILGAL L DIGQ FPD+DP  K   S + + + + LM E  +++ N+D T+I +RPK++P K+ I  +LS LL      +++ A T EK+ +LG    I     ILL
Sbjct:    2 YRIGNGIDFHKLEINLNRPLILGGIECESEFALVGHSDADIILHAISDAILGALALGDIGQYFPDTDPSLKNIDSKIILVKCLELMKEKNFDLVNIDCTVIGERPKITPLKDRITKSLSNLLNLPLDCISVKATTTEKMGALGRQEGIGTFCSILL 157          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_LEPIC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.765e-29
Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  230 FRVGHGFDLHRLEPGY--PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +R+G+G D H+LE     PLI+GGI    E     HSD D++LH + DAILGAL L DIGQ FPD+DP  K   S + + + + LM E  +++ N+D T+I +RPK++P K+ I  +LS LL      +++ A T EK+ +LG    I     ILL
Sbjct:    2 YRIGNGIDFHKLEINLNRPLILGGIECESEFALVGHSDADIILHAISDAILGALALGDIGQYFPDTDPSLKNIDSKIILVKCLELMKEKNFDLVNIDCTVIGERPKIAPLKDRITKSLSNLLNLPLDCISVKATTTEKMGALGRQEGIGTFCSILL 157          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_NITHX6.065e-3045.21Bifunctional enzyme ispD/ispF OS=Nitrobacter hambu... [more]
ISPF_CHLPD7.921e-3040.522-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_BRUSU7.921e-3042.18Bifunctional enzyme ispD/ispF OS=Brucella suis GN=... [more]
ISPF_PSEHT1.035e-2939.872-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_RHILO1.035e-2940.14Bifunctional enzyme ispD/ispF OS=Rhizobium loti GN... [more]
ISPDF_OCHA41.035e-2942.18Bifunctional enzyme ispD/ispF OS=Ochrobactrum anth... [more]
ISPDF_CAMFF1.035e-2939.74Bifunctional enzyme ispD/ispF OS=Campylobacter fet... [more]
ISPDF_RHOPS1.351e-2944.90Bifunctional enzyme ispD/ispF OS=Rhodopseudomonas ... [more]
ISPF_LEPIN1.765e-2942.312-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_LEPIC1.765e-2942.312-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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