CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_DEHSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=ispF PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 59/153 (38.56%), Postives = 96/153 (62.75%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G+G+D+HRL PG  L++GG+ +P E G    SD DVL H ++D++LGA  L DIG  FP  DPK+KG  S   +++   L+ + G+ I N+D+ ++ + PKL  + +T+R +L++ +G DP  V + A T E++  +G    + A  V L+
Sbjct:    2 RIGNGYDVHRLAPGQKLVLGGVEIPFECGLIGWSDADVLTHAIMDSLLGAAALGDIGLYFPPGDPKYKGISSLKLLEQVTDLLAKKGFGIINVDSVIVAEEPKLRGHIDTMRKHLAKAMGIDPGRVGIKASTSEQLGFVGRQEGMVAWAVALV 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_BRASO (Bifunctional enzyme ispD/ispF OS=Bradyrhizobium sp. (strain ORS278) GN=ispDF PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R G G+D+H    G  + + G+ VPH +G  AHSDGDV LH +VDAILGAL   DIG  FP SD KWKGA S  F+K A+  +   G  + NL+ T+I +RPK+ P ++ +R  ++E+ G D + + + A T E++   G    IAA
Sbjct:  235 RTGTGYDVHAFGEGDHVWLCGLRVPHTKGFLAHSDGDVGLHALVDAILGALADGDIGSHFPPSDMKWKGASSDQFLKYAIERVAARGGRVANLEVTMICERPKIGPLRDQMRARIAEISGVDISRIAVKATTSERLGFTGREEGIAA 381          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_AGRVS (Bifunctional enzyme ispD/ispF OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=ispDF PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 60/147 (40.82%), Postives = 92/147 (62.59%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R G+G+D+H+L PG  + + GI + H++    HSD DV LH + DA+L   G  DIG  FP SDP+W+GA S +F++ A  ++ +AG  I N D +LI + PK+ P+++ +R  LSE+LG      ++ A T+EK+  +G    IAA
Sbjct:  248 RTGNGYDVHQLVPGDGVTLCGIFIAHDQALSGHSDADVALHALTDALLATCGAGDIGDHFPPSDPQWRGAASRIFLEHAANIVRDAGGTIMNADISLIAEAPKIGPHRQIMREKLSEILGIALERCSVKATTNEKIGFVGRGEGIAA 394          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_RUBXD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=ispF PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.758e-29
Identity = 65/157 (41.40%), Postives = 97/157 (61.78%), Query Frame = 2
Query:  230 FRVGHGFDLHRLEP---GYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +RVG G D+H       G  L++GG+ +P ERG   HSD DVL H V DA+LGA GL DIG  FPD+D +++ A S   ++EA R++   G+E+ N+DA +I +RP++  ++E +R NL+  LG + + V++   T E++   G    IAA  V LL
Sbjct:    4 YRVGLGVDVHAFADPAEGRQLVLGGVRIPSERGLRGHSDADVLAHAVTDALLGAAGLEDIGHYFPDTDERFRDADSIWLLREARRIVG-GGWEVVNVDAVVICERPRIREHREKMRENLAAALGVEASRVSVRGTTSERLGFTGRGEGIAAQAVCLL 159          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_RHOCA (Bifunctional enzyme ispD/ispF OS=Rhodobacter capsulatus GN=ispDF PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.144e-28
Identity = 60/153 (39.22%), Postives = 92/153 (60.13%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G+G+D+H    G  +++ G+ VPH +    HSD DV +H + DAI GAL   DIG+ FP SDP+WKGA S +F+  A +L    G+ IGN D TLI +RPK+ P+   +   L+ ++  +P+ V++ A T E++   G    IA+   + L
Sbjct:  224 RLGNGYDVHAFCEGDHVVLCGVKVPHVKALLGHSDADVGMHALTDAIYGALAEGDIGRHFPPSDPQWKGAASWIFLDHAAKLAKSRGFRIGNADVTLICERPKVGPHAVAMAAELARIMEIEPSRVSVKATTSERLGFTGREEGIASIATVTL 376          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_NITWN (Bifunctional enzyme ispD/ispF OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=ispDF PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.144e-28
Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R G G+D+H    G  L++ G+ VPH  G  AHSDGDV LH +VDAILGAL   DIG  FP SDP+WKGA S  F+K AV  +   G  + NL+ T+I Q+PK+ P ++ +R  ++++ G   + + + A T E++   G    IAA
Sbjct:  235 RTGTGYDVHAFGEGDHLMLCGVKVPHNCGFLAHSDGDVGLHALVDAILGALADGDIGSHFPPSDPQWKGAASDKFLKYAVDRVTARGGRVANLEVTMICQQPKIGPLRDQMRARIADITGVAISRIAVKATTSERLGFTGREEGIAA 381          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_BARBK (Bifunctional enzyme ispD/ispF OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ispDF PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.144e-28
Identity = 58/147 (39.46%), Postives = 89/147 (60.54%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R G+G+D+H  E G+ + + GI +P E+    HSD DV LH + DA+L   G  DIG  FP SDP+WK A S +F+  A+ ++ +A   I N+D TLI ++PK+ PY+  +  NL ++L      +++ A T+EK+  +G    IAA
Sbjct:  237 RTGNGYDVHSFEDGHYITLCGIKIPFEKKLNGHSDADVALHALTDALLATQGAGDIGTHFPPSDPQWKNASSEIFLHHAIEIIKKAEGRIANVDITLIAEKPKIGPYRHIMTENLMKILKISTDRISIKATTNEKLGFIGREEGIAA 383          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CLOBB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=ispF PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 61/150 (40.67%), Postives = 96/150 (64.00%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTV 682
            RVG G+D+H+L     LI+GG+ +P+E+G   HSD DVLLH ++D++LGA  L DIG+ FPD+D K+KG  S   ++E  +L+ +  Y I N+D+ +I Q+PKL+PY +T+  N+S  L      +N+ A T E +   G    I++ ++
Sbjct:    2 RVGLGYDVHKLVENRKLILGGVEIPYEKGLLGHSDADVLLHAIMDSLLGACALGDIGRHFPDTDNKFKGISSIKLLEEVNKLIIKNRYIINNIDSVIIAQKPKLAPYIDTMTENISNALNIKIDQINIKATTEEGLGFTGGMLGISSQSI 151          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPY (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori GN=ispDF PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSI 667
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DAILGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  NLS+LLG + + ++L A T EK+  +G+   +
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGL 392          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPS (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori (strain Shi470) GN=ispDF PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28
Identity = 61/144 (42.36%), Postives = 92/144 (63.89%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSI 667
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DAILGA+   DIG+ FPD+DP++K A S   +K  +      G+E+  + AT+  + PK++PYK TI  NLS+LLG + + ++L A T EK+  +G+   +
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPQYKNASSKELLKIVLDFSQSIGFELLEMGATIFSEIPKITPYKPTILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGL 392          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_DEHSC6.706e-2938.562-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_BRASO6.706e-2943.54Bifunctional enzyme ispD/ispF OS=Bradyrhizobium sp... [more]
ISPDF_AGRVS6.706e-2940.82Bifunctional enzyme ispD/ispF OS=Agrobacterium vit... [more]
ISPF_RUBXD8.758e-2941.402-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_RHOCA1.144e-2839.22Bifunctional enzyme ispD/ispF OS=Rhodobacter capsu... [more]
ISPDF_NITWN1.144e-2843.54Bifunctional enzyme ispD/ispF OS=Nitrobacter winog... [more]
ISPDF_BARBK1.144e-2839.46Bifunctional enzyme ispD/ispF OS=Bartonella bacill... [more]
ISPF_CLOBB1.494e-2840.672-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_HELPY1.494e-2842.36Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]
ISPDF_HELPS1.494e-2842.36Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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