CX296779
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_DEHSC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=ispF PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29 Identity = 59/153 (38.56%), Postives = 96/153 (62.75%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G+G+D+HRL PG L++GG+ +P E G SD DVL H ++D++LGA L DIG FP DPK+KG S +++ L+ + G+ I N+D+ ++ + PKL + +T+R +L++ +G DP V + A T E++ +G + A V L+ Sbjct: 2 RIGNGYDVHRLAPGQKLVLGGVEIPFECGLIGWSDADVLTHAIMDSLLGAAALGDIGLYFPPGDPKYKGISSLKLLEQVTDLLAKKGFGIINVDSVIVAEEPKLRGHIDTMRKHLAKAMGIDPGRVGIKASTSEQLGFVGRQEGMVAWAVALV 154
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_BRASO (Bifunctional enzyme ispD/ispF OS=Bradyrhizobium sp. (strain ORS278) GN=ispDF PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29 Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673 R G G+D+H G + + G+ VPH +G AHSDGDV LH +VDAILGAL DIG FP SD KWKGA S F+K A+ + G + NL+ T+I +RPK+ P ++ +R ++E+ G D + + + A T E++ G IAA Sbjct: 235 RTGTGYDVHAFGEGDHVWLCGLRVPHTKGFLAHSDGDVGLHALVDAILGALADGDIGSHFPPSDMKWKGASSDQFLKYAIERVAARGGRVANLEVTMICERPKIGPLRDQMRARIAEISGVDISRIAVKATTSERLGFTGREEGIAA 381
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_AGRVS (Bifunctional enzyme ispD/ispF OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=ispDF PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29 Identity = 60/147 (40.82%), Postives = 92/147 (62.59%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673 R G+G+D+H+L PG + + GI + H++ HSD DV LH + DA+L G DIG FP SDP+W+GA S +F++ A ++ +AG I N D +LI + PK+ P+++ +R LSE+LG ++ A T+EK+ +G IAA Sbjct: 248 RTGNGYDVHQLVPGDGVTLCGIFIAHDQALSGHSDADVALHALTDALLATCGAGDIGDHFPPSDPQWRGAASRIFLEHAANIVRDAGGTIMNADISLIAEAPKIGPHRQIMREKLSEILGIALERCSVKATTNEKIGFVGRGEGIAA 394
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_RUBXD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=ispF PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.758e-29 Identity = 65/157 (41.40%), Postives = 97/157 (61.78%), Query Frame = 2 Query: 230 FRVGHGFDLHRLEP---GYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 +RVG G D+H G L++GG+ +P ERG HSD DVL H V DA+LGA GL DIG FPD+D +++ A S ++EA R++ G+E+ N+DA +I +RP++ ++E +R NL+ LG + + V++ T E++ G IAA V LL Sbjct: 4 YRVGLGVDVHAFADPAEGRQLVLGGVRIPSERGLRGHSDADVLAHAVTDALLGAAGLEDIGHYFPDTDERFRDADSIWLLREARRIVG-GGWEVVNVDAVVICERPRIREHREKMRENLAAALGVEASRVSVRGTTSERLGFTGRGEGIAAQAVCLL 159
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_RHOCA (Bifunctional enzyme ispD/ispF OS=Rhodobacter capsulatus GN=ispDF PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.144e-28 Identity = 60/153 (39.22%), Postives = 92/153 (60.13%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691 R+G+G+D+H G +++ G+ VPH + HSD DV +H + DAI GAL DIG+ FP SDP+WKGA S +F+ A +L G+ IGN D TLI +RPK+ P+ + L+ ++ +P+ V++ A T E++ G IA+ + L Sbjct: 224 RLGNGYDVHAFCEGDHVVLCGVKVPHVKALLGHSDADVGMHALTDAIYGALAEGDIGRHFPPSDPQWKGAASWIFLDHAAKLAKSRGFRIGNADVTLICERPKVGPHAVAMAAELARIMEIEPSRVSVKATTSERLGFTGREEGIASIATVTL 376
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_NITWN (Bifunctional enzyme ispD/ispF OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=ispDF PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.144e-28 Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673 R G G+D+H G L++ G+ VPH G AHSDGDV LH +VDAILGAL DIG FP SDP+WKGA S F+K AV + G + NL+ T+I Q+PK+ P ++ +R ++++ G + + + A T E++ G IAA Sbjct: 235 RTGTGYDVHAFGEGDHLMLCGVKVPHNCGFLAHSDGDVGLHALVDAILGALADGDIGSHFPPSDPQWKGAASDKFLKYAVDRVTARGGRVANLEVTMICQQPKIGPLRDQMRARIADITGVAISRIAVKATTSERLGFTGREEGIAA 381
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_BARBK (Bifunctional enzyme ispD/ispF OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ispDF PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.144e-28 Identity = 58/147 (39.46%), Postives = 89/147 (60.54%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673 R G+G+D+H E G+ + + GI +P E+ HSD DV LH + DA+L G DIG FP SDP+WK A S +F+ A+ ++ +A I N+D TLI ++PK+ PY+ + NL ++L +++ A T+EK+ +G IAA Sbjct: 237 RTGNGYDVHSFEDGHYITLCGIKIPFEKKLNGHSDADVALHALTDALLATQGAGDIGTHFPPSDPQWKNASSEIFLHHAIEIIKKAEGRIANVDITLIAEKPKIGPYRHIMTENLMKILKISTDRISIKATTNEKLGFIGREEGIAA 383
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CLOBB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=ispF PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28 Identity = 61/150 (40.67%), Postives = 96/150 (64.00%), Query Frame = 2 Query: 233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTV 682 RVG G+D+H+L LI+GG+ +P+E+G HSD DVLLH ++D++LGA L DIG+ FPD+D K+KG S ++E +L+ + Y I N+D+ +I Q+PKL+PY +T+ N+S L +N+ A T E + G I++ ++ Sbjct: 2 RVGLGYDVHKLVENRKLILGGVEIPYEKGLLGHSDADVLLHAIMDSLLGACALGDIGRHFPDTDNKFKGISSIKLLEEVNKLIIKNRYIINNIDSVIIAQKPKLAPYIDTMTENISNALNIKIDQINIKATTEEGLGFTGGMLGISSQSI 151
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPY (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori GN=ispDF PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28 Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = 2 Query: 236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSI 667 +G GFD H P+++GG+ + E G +AHSDGD LLH V+DAILGA+ DIG+ FPD+DPK+K A S +K + G+E+ + AT+ + PK++PYK I NLS+LLG + + ++L A T EK+ +G+ + Sbjct: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPKYKNASSKELLKIVLDFSQSIGFELFEMGATIFSEIPKITPYKPAILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGL 392
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPS (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori (strain Shi470) GN=ispDF PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.494e-28 Identity = 61/144 (42.36%), Postives = 92/144 (63.89%), Query Frame = 2 Query: 236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSI 667 +G GFD H P+++GG+ + E G +AHSDGD LLH V+DAILGA+ DIG+ FPD+DP++K A S +K + G+E+ + AT+ + PK++PYK TI NLS+LLG + + ++L A T EK+ +G+ + Sbjct: 249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAILGAIKGGDIGEWFPDNDPQYKNASSKELLKIVLDFSQSIGFELLEMGATIFSEIPKITPYKPTILENLSQLLGLEKSQISLKATTMEKMGFIGKQEGL 392 The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bpback to top |