CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_NEOSM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Neorickettsia sennetsu (strain Miyayama) GN=ispF PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.328e-28
Identity = 62/162 (38.27%), Postives = 98/162 (60.49%), Query Frame = 2
Query:  230 FRVGHGFDLHRLEPGYP-----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGAL---GLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            +RVG G+D+H+++         +++ G++VP E    AHSDGDV LH +VDA+LGA    G  DIG +FPD+D KW+G  SS F++  V L+  AGY + N D T++ + P++  YK  ++  +++LL      +N+ A T EK+   G    IAA+ ++ L
Sbjct:    2 YRVGFGYDVHKIDKPVKTGNTCIVLCGVSVPCEYKVIAHSDGDVALHALVDALLGAACIEGANDIGMLFPDTDEKWRGKSSSYFVEHVVTLIQRAGYVVNNADLTIVCETPRIQQYKSEMQQQVADLLCVRKEQINVKATTTEKLGFEGRKEGIAAYAIVSL 163          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_NITSB (Bifunctional enzyme ispD/ispF OS=Nitratiruptor sp. (strain SB155-2) GN=ispDF PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R+G+G D+H       L + GI +P+++G   HSD DV +H ++DA+LGA G  DIG++FPDSD  +K   S   + E VRL+   G+ I ++D T++ Q PK+ P+KE ++ +L +LL     ++NL A T E +  +G N  IAA
Sbjct:  213 RIGNGLDVHAFCEDRKLYLCGIEIPYDKGLAGHSDADVAIHALIDALLGAAGFGDIGELFPDSDETYKDIDSKKLLCETVRLLRACGFVIEHVDLTIVAQNPKIGPFKEKMKESLHDLLQIPYHLINLKATTTEHLGFVGRNEGIAA 359          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_AZOC5 (Bifunctional enzyme ispD/ispF OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ispDF PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            R G GFD+H   PG  +++GG+ +P +RG + HSD DV LH + DA+LGAL   DIG  FP SDP+WKGA S  F+  A+  + E G  + +LD TLI + PK+ P+++ IR  ++ +       V++ A T EK+   G    IAA
Sbjct:  231 RTGTGFDVHAFGPGDHVMLGGVAIPFDRGLDGHSDADVGLHALTDAVLGALADGDIGAHFPPSDPQWKGATSDRFLAFAIERVRERGGIVAHLDLTLICEAPKVGPHRDAIRAEIARICDLPLGRVSVKATTTEKLGFTGRREGIAA 377          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_WIGBR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Wigglesworthia glossinidia brevipalpis GN=ispF PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.414e-28
Identity = 61/154 (39.61%), Postives = 99/154 (64.29%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGY-PLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            RVGHGFD+H+    Y PLI+GG+++P+ +G  +HSDGDV++H ++D++LGA  L DIG +FP++D K+K   S + ++     + +  Y+IGN+D TL L+ PK+S Y   I   +S  L     V+N+ + T E +  +G+ + IA+  V +L
Sbjct:    2 RVGHGFDIHKFGKIYKPLILGGVHIPYCKGVVSHSDGDVIIHSIIDSLLGASSLGDIGILFPNNDIKYKNINSCILLQVVWNCIKKK-YKIGNIDVTLFLEYPKISSYTNKICLCISNCLKCKTDVINIKSKTMEGLGEIGKKKGIASEAVSVL 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_CHLCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Chlorobium chlorochromatii (strain CaD3) GN=ispF PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.414e-28
Identity = 61/153 (39.87%), Postives = 92/153 (60.13%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G G D+H    G  L+IGG+ +P   G + HSD DVLLH + DA+LGA  L DIG  FP++  ++K   S + +K   +L+ E GY   N+DA L+L+ PK++PY + +R N+++ LG     V + A T+EK+  +G      AH V L+
Sbjct:    2 RIGIGIDVHPFAAGRKLVIGGVYIPGHDGLDGHSDADVLLHAISDALLGAAALGDIGLHFPNTSAEFKDIDSMILLKHVGKLLAEHGYAPVNVDAMLLLEAPKIAPYIQQMRQNIADALGLQVGDVAVKATTNEKLGYIGRKEGAEAHAVCLI 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_ANAMM (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Anaplasma marginale (strain St. Maries) GN=ispF PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.414e-28
Identity = 61/159 (38.36%), Postives = 96/159 (60.38%), Query Frame = 2
Query:  224 LPFRVGHGFDLHRLEPGYP----LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVIL 688
            +PFRVG G+D+H      P    +++ G+ +   R  +AHSDGDV  H +VDA+LG +G   IG+ FP++DP+W+   S+ F+ EA       GY + N D T++ + PK+ P+   ++  +S+LLG D + +N+ A T EK+  +G    IAAH V+L
Sbjct:    8 VPFRVGIGYDVHGFADSPPENGHIVLCGVEIAFHRKIKAHSDGDVGTHALVDALLGCVGEGSIGEHFPNTDPRWENMSSTHFLLEAQSKALAKGYAVLNFDLTIVCELPKIIPHVPKMKLFMSKLLGMDASAINIKAVTTEKLGFIGRGEGIAAHAVVL 166          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_HELPG (Bifunctional enzyme ispD/ispF OS=Helicobacter pylori (strain G27) GN=ispDF PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.414e-28
Identity = 59/144 (40.97%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSI 667
            +G GFD H      P+++GG+ +  E G +AHSDGD LLH V+DA+LGA+   DIG+ FPD+DPK+K A S   +K  +      G+E+  + AT+  + PK++PYK  I  +LS+LLG + + ++L A T EK+  +G+   +
Sbjct:  249 IGMGFDTHAFIKDKPMVLGGVVLDCEFGLKAHSDGDALLHAVIDAVLGAIKGGDIGEWFPDNDPKYKNASSKELLKVVLDFSQSIGFELLEMGATIFSEIPKITPYKPAILESLSQLLGLEKSQISLKATTMEKMGFIGKQEGL 392          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_DESPS (Bifunctional enzyme ispD/ispF OS=Desulfotalea psychrophila GN=ispDF PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.414e-28
Identity = 60/153 (39.22%), Postives = 92/153 (60.13%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+GHGFD H+L     LI+GG+ +P+  G   HSD DVL+H + DA+LGA+G  DIG+ FPDS   +K   S   ++  ++ + E  Y+IGN D ++I Q PKL+PY + ++  ++       + +N+ A T EK+   G    I+ H V+LL
Sbjct:  232 RIGHGFDAHQLVEKRRLILGGVEIPYHLGLAGHSDADVLVHALCDALLGAIGAGDIGRHFPDSSDAFKDIYSIRLLESVMQKVGELNYKIGNADISVICQAPKLAPYLKQMQEIIATSCACQISDINIKATTTEKMGYTGRGEGISCHAVVLL 384          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_THET2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ispF PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 60/134 (44.78%), Postives = 84/134 (62.69%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHE 634
            R+G+G D HRLE G PL + G+ +P   G  AHSDGD  LH + DA+L A GL DIG +FPD+DP+W+G  S VF++EA+RL++  G  +      L L RPKL P+++ +  +L+ LL      + LT  T E
Sbjct:    2 RIGYGEDSHRLEEGRPLYLCGLLIPSPVGALAHSDGDAALHALTDALLSAYGLGDIGLLFPDTDPRWRGERSEVFLREALRLVEARGARLLQASLVLTLDRPKLGPHRKALVDSLARLLRLPQDRIGLTFKTSE 135          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_PELUB (Bifunctional enzyme ispD/ispF OS=Pelagibacter ubique GN=ispDF PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 58/150 (38.67%), Postives = 90/150 (60.00%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTV 682
            + G GFD+HRL P   L +GG+ +P   G   HSDGD +LH V DAILGA  + DIG+ F D + K+K   S++ + E ++   + GY I NLD  +I Q+PK+  YK+ I   ++++    PT +N+   T EK+  +G+ ++IA   +
Sbjct:  215 KFGIGFDVHRLVPNKKLYLGGVKIPSPIGTLGHSDGDPVLHAVTDAILGACSMGDIGEKFSDKNKKFKNIRSTILLSEIIKQTLKKGYLINNLDINIITQKPKIQKYKKQILNCIAKICNISPTQINIKGKTTEKLGVIGKEKAIACEVI 364          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_NEOSM3.328e-2838.272-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_NITSB4.346e-2840.14Bifunctional enzyme ispD/ispF OS=Nitratiruptor sp.... [more]
ISPDF_AZOC54.346e-2842.18Bifunctional enzyme ispD/ispF OS=Azorhizobium caul... [more]
ISPF_WIGBR7.414e-2839.612-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CHLCH7.414e-2839.872-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ANAMM7.414e-2838.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_HELPG7.414e-2840.97Bifunctional enzyme ispD/ispF OS=Helicobacter pylo... [more]
ISPDF_DESPS7.414e-2839.22Bifunctional enzyme ispD/ispF OS=Desulfotalea psyc... [more]
ISPF_THET29.683e-2844.782-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_PELUB9.683e-2838.67Bifunctional enzyme ispD/ispF OS=Pelagibacter ubiq... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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