CX296779

Overview
NameCX296779
Unique NameCX296779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJJ (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=ispDF PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  239 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIA 670
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D   +N+ A T EK+  +G    +A
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATTTEKLGFIGRKEGMA 356          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJ8 (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=ispDF PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  239 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIA 670
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D   +N+ A T EK+  +G    +A
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATTTEKLGFIGRKEGMA 356          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJR (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni (strain RM1221) GN=ispDF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  239 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIA 670
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D   +N+ A T EK+  +G    +A
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATTTEKLGFIGRKEGMA 356          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_CAMJE (Bifunctional enzyme ispD/ispF OS=Campylobacter jejuni GN=ispDF PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 2
Query:  239 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIA 670
            G+GFD+H      PL++ G+ +    G +AHSDGDVL H + DAILGA GL DIG+++PD+D K+K A S   +K+A   + E G+E+ N+D  ++ Q PKL  +K+ +++N++  L  D   +N+ A T EK+  +G    +A
Sbjct:  213 GNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKATTTEKLGFIGRKEGMA 356          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_WOLSU (Bifunctional enzyme ispD/ispF OS=Wolinella succinogenes GN=ispDF PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = 2
Query:  239 GHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            G GFD+H    G  L + G+N+P     +AHSDGDV +H ++DA+LGA G  DIG+ FPDSD  +KG  S++ ++E ++ +   G+E+ N D T++ Q PKLSPYKE +   L E++      +++ A T E +  +G    +A    ++L
Sbjct:  216 GSGFDVHAFMEGEGLRLAGVNIPAPVTFKAHSDGDVAIHALIDALLGAAGAGDIGEWFPDSDLAYKGVDSTLLLQEVIKFIRGIGFELINADLTIMAQAPKLSPYKEAMERRLGEVMEVSRQRISVKATTTESLGFVGRKEGVAVSAQVVL 366          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=ispF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 58/153 (37.91%), Postives = 97/153 (63.40%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I + PK+ PY   +R+NLS  L  +   +++ + T +K+  +G   +IA H++++L
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLSLDLNTEIDNISIKSTTSKKIGCIGRKEAIACHSIVML 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_BUCAI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ispF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 58/153 (37.91%), Postives = 97/153 (63.40%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I + PK+ PY   +R+NLS  L  +   +++ + T +K+  +G   +IA H++++L
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLSLDLNTEIDNISIKSTTSKKIGCIGRKEAIACHSIVML 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPF_BUCA5 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=ispF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 58/153 (37.91%), Postives = 97/153 (63.40%), Query Frame = 2
Query:  233 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAAHTVILL 691
            R+G+GFDLH      PLIIGG+ +P E+G  AHS+GD+L+H ++DA+LGA  + DIG  FP ++  +K   S + +K+    +    Y+I N+D T+I + PK+ PY   +R+NLS  L  +   +++ + T +K+  +G   +IA H++++L
Sbjct:    2 RIGYGFDLHAFGSTKPLIIGGVLIPCEKGLIAHSNGDLLIHSLIDALLGATAMGDIGSFFPSNNYIYKNIDSRILLKKIWNKIILLNYDICNIDITIIAEYPKMLPYIFFMRSNLSLDLNTEIDNISIKSTTSKKIGCIGRKEAIACHSIVML 154          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVV (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ispDF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 62/146 (42.47%), Postives = 88/146 (60.27%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            VG G+D+HR   G P+ +GG+ +P      AHSDGDVLLH + DA+LG +G  DIG  FPDSD  +  A S++ +   + +  EA   + ++D T++ Q PKLSP+++ IR N++ LL    T VN  A T E +   GE R I A
Sbjct:  239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQVPKLSPWRDKIRANVARLLDLPVTSVNFKATTEEGLGFTGEKRGIKA 384          
BLAST of CX296779 vs. ExPASy Swiss-Prot
Match: ISPDF_DESVH (Bifunctional enzyme ispD/ispF OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ispDF PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.157e-27
Identity = 62/146 (42.47%), Postives = 88/146 (60.27%), Query Frame = 2
Query:  236 VGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLTAHTHEKVDSLGENRSIAA 673
            VG G+D+HR   G P+ +GG+ +P      AHSDGDVLLH + DA+LG +G  DIG  FPDSD  +  A S++ +   + +  EA   + ++D T++ Q PKLSP+++ IR N++ LL    T VN  A T E +   GE R I A
Sbjct:  239 VGWGYDVHRYGEGRPMKLGGVLIPEGPEVVAHSDGDVLLHALADALLGCIGAGDIGLHFPDSDAAFDNANSAMLLDRVLHMTHEARLRLTHVDLTIVAQVPKLSPWRDKIRANVARLLDLPVTSVNFKATTEEGLGFTGEKRGIKA 384          
The following BLAST results are available for this feature:
BLAST of CX296779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPDF_CAMJJ9.683e-2840.28Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_CAMJ89.683e-2840.28Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_CAMJR1.265e-2740.28Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_CAMJE1.265e-2740.28Bifunctional enzyme ispD/ispF OS=Campylobacter jej... [more]
ISPDF_WOLSU1.652e-2738.41Bifunctional enzyme ispD/ispF OS=Wolinella succino... [more]
ISPF_BUCAT2.157e-2737.912-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCAI2.157e-2737.912-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BUCA52.157e-2737.912-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_DESVV2.157e-2742.47Bifunctional enzyme ispD/ispF OS=Desulfovibrio vul... [more]
ISPDF_DESVH2.157e-2742.47Bifunctional enzyme ispD/ispF OS=Desulfovibrio vul... [more]

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Properties
Property NameValue
Genbank descriptionC05802G03SK FerrChloL1 Citrus clementina cDNA clone C05802G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296779 ID=CX296779; Name=CX296779; organism=Citrus clementina; type=EST; length=691bp
GATGGCCGCTCAATCATACACCACCATTCCTCTCTACAGCAAAATTACGA
ATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCCTCGTAGCTTAACC
GCCAAACATCTCCGCACAACACAGTCAACGTCGCTGCCTCGTATTTCAGT
TTCAGCTGCAGCCACTTCTTCCATCGAAGTTAAAGAGTCATCGGCTTCGA
TCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGTGGGCCACGGGTTT
GATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCATCGGTGGAATCAA
TGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGACGGTGATGTTTTGC
TTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGGTCTTCCTGATATT
GGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGGGTGCACCATCCTC
TGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAGGCCGGCTATGAGA
TTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACCAAAATTGAGCCCA
TACAAGGAGACTATCCGAACCAACTTGTCTGAACTGCTAGGAGCAGACCC
CACCGTTGTAAATCTGACAGCGCACACTCATGAAAAAGTTGATAGCCTTG
GTGAAAATCGAAGTATTGCAGCTCACACTGTGATCCTTCTC
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