CX296780

Overview
NameCX296780
Unique NameCX296780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_BOVIN (40S ribosomal protein S27 OS=Bos taurus GN=RPS27 PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.803e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27L_RAT (40S ribosomal protein S27-like protein OS=Rattus norvegicus GN=Rps27l PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.803e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27L_MOUSE (40S ribosomal protein S27-like protein OS=Mus musculus GN=Rps27l PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.803e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27L_HUMAN (40S ribosomal protein S27-like protein OS=Homo sapiens GN=RPS27L PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.803e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27L_BOVIN (40S ribosomal protein S27-like protein OS=Bos taurus GN=RPS27L PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.803e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSLDEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa GN=rps-27 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.852e-25
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 3
Query:   66 IDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            +DLLNP             LV +P SFFMDVKC GCF ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    5 VDLLNPSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_PONAB (40S ribosomal protein S27 OS=Pongo abelii GN=RPS27 PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.169e-24
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            D L+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DPLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_HOMAM (40S ribosomal protein S27 OS=Homarus americanus GN=RPS27 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.688e-23
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P            RLVQ PNS+FMDVKC GCF I+TVFSH+QTVV C  C +VLCQPTGG+A+LT+GCSFR+K
Sbjct:    6 DLLHPSPSEEKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQPTGGKAKLTDGCSFRKK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_CAEEL (40S ribosomal protein S27 OS=Caenorhabditis elegans GN=rps-27 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 2.879e-23
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 3
Query:   66 IDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            +DLL+P            RLVQ PNS+FMDVKC GCF I+TVFSH+ TVVVC  C +VLCQPT G+A+LTEGCSFR+K
Sbjct:    5 VDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27B_YEAST (40S ribosomal protein S27-B OS=Saccharomyces cerevisiae GN=RPS27B PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.519e-21
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P A           LVQ P S+F+DVKC GC NITTVFSH+QT V C +C +VLC PTGG+A+L+EG SFRRK
Sbjct:    6 DLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGGKAKLSEGTSFRRK 82          
The following BLAST results are available for this feature:
BLAST of CX296780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS27_BOVIN1.803e-2568.8340S ribosomal protein S27 OS=Bos taurus GN=RPS27 P... [more]
RS27L_RAT1.803e-2568.8340S ribosomal protein S27-like protein OS=Rattus n... [more]
RS27L_MOUSE1.803e-2568.8340S ribosomal protein S27-like protein OS=Mus musc... [more]
RS27L_HUMAN1.803e-2568.8340S ribosomal protein S27-like protein OS=Homo sap... [more]
RS27L_BOVIN1.803e-2568.8340S ribosomal protein S27-like protein OS=Bos taur... [more]
RS27_NEUCR6.852e-2566.6740S ribosomal protein S27 OS=Neurospora crassa GN=... [more]
RS27_PONAB1.169e-2467.5340S ribosomal protein S27 OS=Pongo abelii GN=RPS27... [more]
RS27_HOMAM1.688e-2363.6440S ribosomal protein S27 OS=Homarus americanus GN... [more]
RS27_CAEEL2.879e-2362.8240S ribosomal protein S27 OS=Caenorhabditis elegan... [more]
RS27B_YEAST3.519e-2159.7440S ribosomal protein S27-B OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC05802G04SK FerrChloL1 Citrus clementina cDNA clone C05802G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296780 ID=CX296780; Name=CX296780; organism=Citrus clementina; type=EST; length=506bp
TCTAGGGTTTCCTCCTGAATCTCGTCTGGCAATAGCAATTAGCAAGCATG
GTTCTCCAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTTGAGAA
GAAGAAGCACAAGCTTAAGCGGCTTGTTCAATCCCCCAATTCCTTTTTCA
TGGATGTGAAATGTCAGGGTTGTTTCAACATAACAACTGTTTTCAGCCAC
TCTCAAACTGTTGTGGTTTGTGGCAACTGCCAATCCGTTCTGTGCCAGCC
CACTGGTGGTCGTGCCAGACTCACTGAGGGATGCTCGTTCAGAAGAAAGG
GTGACTAAGTGTTGCCTAAATGATAGATCTTTTCATTTTGGTTATGATGT
ATTAATTTTGGTAGAAGTTTTAAGGTTAGACAGTGTTTTAACCTTTTGTT
TCAAATTTAATTTACTCGATGTAGTGGATGATCTTATGTTTGGAAGAAAA
TATTTTTAAGTGAATGTTTTCCTCGTGCCGAATTCGGCACGAAGGGGGGG
CCCGGT
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