CX296780

Overview
NameCX296780
Unique NameCX296780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27A_YEAST (40S ribosomal protein S27-A OS=Saccharomyces cerevisiae GN=RPS27A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.596e-21
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            DLL+P A           LVQ P S+F+DVKC GC NITTVFSH+QT V C +C ++LC PTGG+A+L+EG SFRRK
Sbjct:    6 DLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLSEGTSFRRK 82          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_DICDI (40S ribosomal protein S27 OS=Dictyostelium discoideum GN=rps27 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 6.002e-21
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   69 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 305
            DLL P            RLVQ+PNSFFMD+ C GC  ITTVFSH+Q VV+C +C +V+ QPTGGRAR+T GC  R+K D
Sbjct:    7 DLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCSTVIAQPTGGRARITAGCRLRQKSD 85          
BLAST of CX296780 vs. ExPASy Swiss-Prot
Match: RS27_ENTHI (40S ribosomal protein S27 OS=Entamoeba histolytica GN=RPS27 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.443e-14
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 3
Query:   63 DIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 299
            ++DLLNP A          RLV +PNS+F+++KC  C   TT FSH+   ++C  C   L QPTGG+ +LT+ C FR K
Sbjct:    5 EVDLLNPTAASEAKAHKMKRLVPTPNSYFLEIKCPKCGATTTTFSHAHRQILCQKCGQPLGQPTGGKLKLTQQCKFRIK 83          
The following BLAST results are available for this feature:
BLAST of CX296780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS27A_YEAST4.596e-2158.4440S ribosomal protein S27-A OS=Saccharomyces cerev... [more]
RS27_DICDI6.002e-2156.9640S ribosomal protein S27 OS=Dictyostelium discoid... [more]
RS27_ENTHI2.443e-1444.3040S ribosomal protein S27 OS=Entamoeba histolytica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802G04SK FerrChloL1 Citrus clementina cDNA clone C05802G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296780 ID=CX296780; Name=CX296780; organism=Citrus clementina; type=EST; length=506bp
TCTAGGGTTTCCTCCTGAATCTCGTCTGGCAATAGCAATTAGCAAGCATG
GTTCTCCAAAACGATATTGATTTGTTGAATCCTCCTGCTGAGCTTGAGAA
GAAGAAGCACAAGCTTAAGCGGCTTGTTCAATCCCCCAATTCCTTTTTCA
TGGATGTGAAATGTCAGGGTTGTTTCAACATAACAACTGTTTTCAGCCAC
TCTCAAACTGTTGTGGTTTGTGGCAACTGCCAATCCGTTCTGTGCCAGCC
CACTGGTGGTCGTGCCAGACTCACTGAGGGATGCTCGTTCAGAAGAAAGG
GTGACTAAGTGTTGCCTAAATGATAGATCTTTTCATTTTGGTTATGATGT
ATTAATTTTGGTAGAAGTTTTAAGGTTAGACAGTGTTTTAACCTTTTGTT
TCAAATTTAATTTACTCGATGTAGTGGATGATCTTATGTTTGGAAGAAAA
TATTTTTAAGTGAATGTTTTCCTCGTGCCGAATTCGGCACGAAGGGGGGG
CCCGGT
back to top