CX296786
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAAC (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain COL) GN=sucD PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52 Identity = 103/164 (62.80%), Postives = 120/164 (73.17%), Query Frame = 1 Query: 220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711 +VF+DKNT+V+ QGITG FHT+Q ++YGTK+V GVTP KGG G+PVFN+V EAK ET A SVIYVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 5.998e-52 Identity = 101/164 (61.59%), Postives = 121/164 (73.78%), Query Frame = 1 Query: 220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711 +VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+N+V EAK ET AN SV+YVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 5.998e-52 Identity = 101/164 (61.59%), Postives = 121/164 (73.78%), Query Frame = 1 Query: 220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711 +VF+DKNT+V+ QGITG FHT+Q ++YGT++V GVTP KGG G+PV+N+V EAK ET AN SV+YVP PF LD+V+CITE IP DMV+VK L + KTRL+GPNCPG+I ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q Sbjct: 2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 6.207e-49 Identity = 95/165 (57.58%), Postives = 119/165 (72.12%), Query Frame = 1 Query: 220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711 A+ V+K+T+V+ QGITGK G+FH +Q EYGT++V GVTP KGG E G+PVFN+V EA ET AN S+I+VP PF ++LVVCITEGIP DM+ VK L +L+GPNCPG+I PGE K+GIMPG+I K G++GIVSRSGTLTYEA +Q Sbjct: 2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQ 166
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.869e-45 Identity = 91/163 (55.83%), Postives = 113/163 (69.33%), Query Frame = 1 Query: 220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVF 708 A+ VD+ T+V+ QGITG G FHTE+ + YGTK+V GVTP KGGTE LG+PV++SV EA E ANASVI+VP PF + ++VCITEGIP HD +++ + T LIGPNCPGII PG+ +GIMP I KPG VGIVSRSGTLTY+ + Sbjct: 2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAVREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAY 163
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45 Identity = 92/165 (55.76%), Postives = 110/165 (66.67%), Query Frame = 1 Query: 223 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714 + + K+T+VI QG TGK GTFH + EYGT +VGG PKK G HLG PVF SV +A ET A AS I+VPPP + L VCITEGIPQHDM+ + L Q KTRL+GPNCPGII P + +IGI P I + G++GI+SRSGTLTYEAV QT Sbjct: 31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQT 195
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2) HSP 1 Score: 174.096 bits (440), Expect = 6.647e-43 Identity = 84/167 (50.30%), Postives = 111/167 (66.47%), Query Frame = 1 Query: 220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711 ++ +D+ T ++ QGITG GTFH ++ I YG+ +VGGVTP KGG H G+PVFN+V EA T A S+ +V PPF L LV IT+GIP DM+RVK L R + +T ++GPNC GII PG+ +GIMPG+I+ PG+VG++SRSGTL YEA Q Sbjct: 2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAVEATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQ 168
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_THETH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus thermophilus GN=sucD PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.481e-42 Identity = 88/160 (55.00%), Postives = 113/160 (70.62%), Query Frame = 1 Query: 223 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEA 702 + V++ TRV+ QGITG+ G FHT+Q ++YGTK+V GVTP KGGTE LG+PV+++V EA A + +AS+I+VP P + L+V ITEGIP DMVR + + +RLIG NCPGII E KIGIMPG++ K GRVGI+SRSGTLTYEA Sbjct: 2 ILVNRETRVLVQGITGREGQFHTKQMLDYGTKIVAGVTPGKGGTEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEA 160
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.299e-42 Identity = 84/160 (52.50%), Postives = 112/160 (70.00%), Query Frame = 1 Query: 220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYE 699 A+ VD+NTRVI QGITG G+F ++ ++YGTK+VGGVTP KGG+E G+PV+N+V EA AET A+ S+IYVP F L LVVC+TEGIP +D + + L R+ K+ L+GPNCPG+I PG K+G++P G +G+VSRSGTLTY+ Sbjct: 5 AILVDENTRVIVQGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGSEVHGIPVYNTVEEAVAETNADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEMLIHRKL-REVKSMLLGPNCPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQ 163
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 8.125e-41 Identity = 88/163 (53.99%), Postives = 109/163 (66.87%), Query Frame = 1 Query: 223 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711 + +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+NSV E E NAS+I+VP PF LDLVV ITE IP HD +++ +R KT +IGPN PGII PG K+GIMP +I G +GIVSRSGTLTYE Q Sbjct: 7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTEEMDVNASIIFVPAPF-AKDAAFESIKHLDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQ 167 The following BLAST results are available for this feature:
BLAST of CX296786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296786 ID=CX296786; Name=CX296786; organism=Citrus clementina; type=EST; length=718bpback to top |