CX296786

Overview
NameCX296786
Unique NameCX296786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296786_ssr447 microsatellite CX296786_ssr447:447..458. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6281 contig Ccv1_Contig6281:61..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAAC (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain COL) GN=sucD PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 103/164 (62.80%), Postives = 120/164 (73.17%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.998e-52
Identity = 101/164 (61.59%), Postives = 121/164 (73.78%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +VF+DKNT+V+ QGITG    FHT+Q ++YGT++V GVTP KGG    G+PV+N+V EAK ET AN SV+YVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.998e-52
Identity = 101/164 (61.59%), Postives = 121/164 (73.78%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            +VF+DKNT+V+ QGITG    FHT+Q ++YGT++V GVTP KGG    G+PV+N+V EAK ET AN SV+YVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.207e-49
Identity = 95/165 (57.58%), Postives = 119/165 (72.12%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            A+ V+K+T+V+ QGITGK G+FH +Q  EYGT++V GVTP KGG E  G+PVFN+V EA  ET AN S+I+VP PF            ++LVVCITEGIP  DM+ VK   L      +L+GPNCPG+I PGE K+GIMPG+I K G++GIVSRSGTLTYEA +Q
Sbjct:    2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQ 166          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.869e-45
Identity = 91/163 (55.83%), Postives = 113/163 (69.33%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVF 708
            A+ VD+ T+V+ QGITG  G FHTE+ + YGTK+V GVTP KGGTE LG+PV++SV EA  E  ANASVI+VP PF            + ++VCITEGIP HD +++   +     T LIGPNCPGII PG+  +GIMP  I KPG VGIVSRSGTLTY+  +
Sbjct:    2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAVREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAY 163          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 92/165 (55.76%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  223 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQT 714
            + + K+T+VI QG TGK GTFH   + EYGT +VGG  PKK G  HLG PVF SV +A  ET A AS I+VPPP             + L VCITEGIPQHDM+ +   L  Q KTRL+GPNCPGII P  + +IGI P  I + G++GI+SRSGTLTYEAV QT
Sbjct:   31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQT 195          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.647e-43
Identity = 84/167 (50.30%), Postives = 111/167 (66.47%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            ++ +D+ T ++ QGITG  GTFH ++ I YG+ +VGGVTP KGG  H G+PVFN+V EA   T A  S+ +V PPF            L LV  IT+GIP  DM+RVK  L R   + +T ++GPNC GII PG+  +GIMPG+I+ PG+VG++SRSGTL YEA  Q
Sbjct:    2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAVEATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQ 168          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_THETH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus thermophilus GN=sucD PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.481e-42
Identity = 88/160 (55.00%), Postives = 113/160 (70.62%), Query Frame = 1
Query:  223 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEA 702
            + V++ TRV+ QGITG+ G FHT+Q ++YGTK+V GVTP KGGTE LG+PV+++V EA A  + +AS+I+VP P             + L+V ITEGIP  DMVR    + +   +RLIG NCPGII   E KIGIMPG++ K GRVGI+SRSGTLTYEA
Sbjct:    2 ILVNRETRVLVQGITGREGQFHTKQMLDYGTKIVAGVTPGKGGTEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEA 160          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.299e-42
Identity = 84/160 (52.50%), Postives = 112/160 (70.00%), Query Frame = 1
Query:  220 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYE 699
            A+ VD+NTRVI QGITG  G+F  ++ ++YGTK+VGGVTP KGG+E  G+PV+N+V EA AET A+ S+IYVP  F            L LVVC+TEGIP +D + +   L R+ K+ L+GPNCPG+I PG  K+G++P      G +G+VSRSGTLTY+
Sbjct:    5 AILVDENTRVIVQGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGSEVHGIPVYNTVEEAVAETNADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEMLIHRKL-REVKSMLLGPNCPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQ 163          
BLAST of CX296786 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.125e-41
Identity = 88/163 (53.99%), Postives = 109/163 (66.87%), Query Frame = 1
Query:  223 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 711
            + +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+NSV E   E   NAS+I+VP PF            LDLVV ITE IP HD +++    +R  KT +IGPN PGII PG  K+GIMP +I   G +GIVSRSGTLTYE   Q
Sbjct:    7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTEEMDVNASIIFVPAPF-AKDAAFESIKHLDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQ 167          
The following BLAST results are available for this feature:
BLAST of CX296786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCD_STAAC3.516e-5262.80Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAES5.998e-5261.59Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAEQ5.998e-5261.59Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_AQUAE6.207e-4957.58Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD2_ARCFU1.869e-4555.83Succinyl-CoA ligase [ADP-forming] subunit alpha 2 ... [more]
SUCA_YEAST3.188e-4555.76Succinyl-CoA ligase [ADP-forming] subunit alpha, m... [more]
MTKB_METEA6.647e-4350.30Malate--CoA ligase subunit alpha OS=Methylobacteri... [more]
SUCD_THETH1.481e-4255.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD1_ARCFU3.299e-4252.50Succinyl-CoA ligase [ADP-forming] subunit alpha 1 ... [more]
SUCD_METTH8.125e-4153.99Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionC05802G10SK FerrChloL1 Citrus clementina cDNA clone C05802G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296786 ID=CX296786; Name=CX296786; organism=Citrus clementina; type=EST; length=718bp
TGCCGAATTCGGCACGAGGCGGCACGAGGGAAAATCAGCGAATCAGATTA
AAGTGAAGTGAATCAAATGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCT
CGATCGGATCTCGCAGACCGTCTACTGCTTCTTCCGTTTCACATTACAGA
TTATCATCGTCGGCGGCGCCGGCGGCCCACTCTCGAAATTATGGGTCGTC
GGCGGCGGCGTCTCATCCGGCAGTTTTCGTCGACAAAAACACTCGAGTTA
TATGCCAAGGCATCACCGGAAAAAACGGCACGTTCCACACCGAACAAGCC
ATCGAATACGGCACCAAAATGGTGGGTGGCGTGACGCCGAAGAAGGGTGG
GACTGAGCACTTGGGACTTCCTGTATTCAACTCGGTTGCTGAAGCTAAGG
CTGAAACGAAGGCTAATGCTTCTGTCATTTATGTTCCTCCGCCATTTGCT
GCTGCTGCTATCATGGAGGCTATGGAGGCTGAGTTGGATCTTGTCGTCTG
TATCACCGAAGGAATCCCTCAACATGATATGGTGCGAGTGAAAGCTGCTC
TAAACAGGCAATCTAAAACTCGGCTGATTGGTCCCAACTGCCCTGGTATC
ATCAAACCTGGAGAATGTAAGATTGGCATTATGCCTGGGTATATTCACAA
ACCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTACCTTGACCTACGAAG
CAGTTTTTCAAACACTGT
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