CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3A_RAT (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.475e-53
Identity = 100/162 (61.73%), Postives = 128/162 (79.01%), Query Frame = -2
Query:  243 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 728
            +HKANIM+ +DGLF   CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+T S NIG  G+A+ E+VHG+APDIAGK++ANPTALLLS+V MLRH+ L D A +I+ A  +TI +GK  T DLGG+S  SDFT+ IC
Sbjct:  198 VHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTQSGNIGANGVAIFESVHGTAPDIAGKDMANPTALLLSAVMMLRHMGLFDHAAKIEAACFATIKDGKSLTKDLGGNSKCSDFTEEIC 359          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3A_CAEEL (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=F43G9.1 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 3.048e-51
Identity = 95/162 (58.64%), Postives = 129/162 (79.63%), Query Frame = -2
Query:  243 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 728
            +HKANIM+++DGLF S+CRE A  YP+I ++E  +D  C+ +V++P+ +DVLVMPNLYGDI+SDLCAGL+GGLG+TPS NIG+G  A+ E+VHG+APDIAG++ ANPTALLLS+V MLR++ L   A RI+ A+   IA+G+ +T DLGG+ T S FT  +C
Sbjct:  191 VHKANIMRQSDGLFLSICREQAALYPDIKFKEAYLDTVCLNMVQDPSQYDVLVMPNLYGDILSDLCAGLVGGLGVTPSGNIGKGA-AVFESVHGTAPDIAGQDKANPTALLLSAVMMLRYMNLPQHAARIEKAVFDAIADGRAKTGDLGGTGTCSSFTADVC 351          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH2_SCHPO (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Schizosaccharomyces pombe GN=idh2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.122e-45
Identity = 95/168 (56.55%), Postives = 121/168 (72.02%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEG-KYRTADLGGSSTTSDFTKAICDHL 728
            +HKA IM+  DGLF    +E+A +YP+I   E ++DN C+ +V +P  ++  V+VMPNLYGDI+SD+CAGLIGGLGLTPS NIG    ++ EAVHG+APDIAGK LANPTALLLSSV ML+H+ L+D A RI++AI  T+A     RT DLGG S    +T AI   L
Sbjct:  211 VHKATIMRMADGLFLECAKELAPEYPDIELREEILDNACLKIVTDPVPYNNTVMVMPNLYGDIVSDMCAGLIGGLGLTPSGNIGNQA-SIFEAVHGTAPDIAGKGLANPTALLLSSVMMLKHMNLNDYAKRIESAIFDTLANNPDARTKDLGGKSNNVQYTDAIISKL 377          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDHB_DICDI (Isocitrate dehydrogenase [NAD] regulatory subunit B, mitochondrial OS=Dictyostelium discoideum GN=idhB PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.465e-45
Identity = 85/165 (51.52%), Postives = 120/165 (72.73%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANI ++TDGLF + C ++A++YPEI +E  +IDNCCM LVK+P  +DV+V PNLYG+I+S++ A L+GG GL    N+GEG I      H  A DIAGK+ ANPT LLL+SV ML+HL L++ A +++NA+ + I EG   T+D+GG S+T  FT A+ D++
Sbjct:  192 VHKANIQKQTDGLFLATCTQIAKEYPEIKFENTIIDNCCMQLVKSPEQYDVMVTPNLYGNIVSNIGAALVGGPGLAGGANVGEGSIIFEMGAHHVAADIAGKDKANPTGLLLASVMMLKHLGLNEHATKVENAVKAVIKEGTL-TSDIGGKSSTKQFTGAVIDYI 355          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH2_YEAST (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=IDH2 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.339e-43
Identity = 96/169 (56.80%), Postives = 127/169 (75.15%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL-IGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEG-KYRTADLGGSSTTSDFTKAICDHL 728
            +HK+ I +  DGLF +V +E++++YP++T E  +IDN  + +V NP+A+   V V PNLYGDI+SDL +GL  G LGLTPS NIG   I++ EAVHGSAPDIAG++ ANPTALLLSSV ML H+ L + AD+IQNA+LSTIA G + RT DL G++TTS FT+A+   L
Sbjct:  202 VHKSTIQRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHK-ISIFEAVHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHADQIQNAVLSTIASGPENRTGDLAGTATTSSFTEAVIKRL 369          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ARCFU (3-isopropylmalate dehydrogenase OS=Archaeoglobus fulgidus GN=leuB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.055e-43
Identity = 88/165 (53.33%), Postives = 117/165 (70.91%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKAN+M+KT GLF  VCREVA+ YPEI Y +  ID  CM LV +P  FDV+V  N++GDI+SDL AGL+GGLGL PS N+GE   A+ E VHG+A DIAGK +ANPTA++L++  MLRH    ++A +++ A+  TI EGK +T DLGG+  T +F   +   L
Sbjct:  163 LHKANVMKKTCGLFRDVCREVAKDYPEIQYNDYYIDAACMYLVMDPFRFDVIVTTNMFGDIVSDLAAGLVGGLGLAPSANVGE-RTAIFEPVHGAAFDIAGKGIANPTAMILTACMMLRHFGYVEEAKKVEEAVEKTIKEGK-KTPDLGGNLKTMEFANEVASLL 325          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3B_BOVIN (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Bos taurus GN=IDH3B PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.412e-42
Identity = 84/165 (50.91%), Postives = 108/165 (65.45%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   C EVAE YP+I +E+++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P  +                    G+N+ANPTA+LLS+  MLRHL L   ++ I  A+   I  GK RT D+GG STT+DF K++  HL
Sbjct:  216 VHKANIMKLGDGLFLQCCEEVAELYPKIKFEKMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEHHSNMIAEAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 380          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH2_KLULA (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Kluyveromyces lactis GN=IDH2 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.762e-42
Identity = 91/169 (53.85%), Postives = 125/169 (73.96%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGL-IGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA-EGKYRTADLGGSSTTSDFTKAICDHL 728
            +HK+ I +  DGLF  V ++++ +YP+I  +  ++DN  +  V++P A+D  V+V PNLYGDI+SDL +GL  G LGLTPS NIG   +++ EAVHGSAPDIAG+N ANPTALLLSSV ML H+ L + AD+I+ A+L+TIA + K RT DLGGS++TS FT A+ + L
Sbjct:  201 VHKSTIQRLADGLFVDVAKKLSSEYPDIELQTELLDNTVLKTVQHPEAYDDVVVVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHT-VSIFEAVHGSAPDIAGQNKANPTALLLSSVMMLNHMGLTEHADKIEKAVLTTIASDAKNRTGDLGGSASTSSFTDAVIERL 368          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3B_MACFA (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Macaca fascicularis GN=IDH3B PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.828e-42
Identity = 84/165 (50.91%), Postives = 108/165 (65.45%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   C EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P  +                    G+N+ANPTA+LLS+  MLRHL L   ++ I +A+   I  GK RT D+GG STT+DF K++  HL
Sbjct:  216 VHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSNMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 380          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3B_RAT (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Rattus norvegicus GN=Idh3B PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.284e-41
Identity = 84/165 (50.91%), Postives = 107/165 (64.85%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   C EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P  +                    G+N+ANPTA+LLS+  MLRHL L   +  I +A+   I  GK RT D+GG STT+DF K++  HL
Sbjct:  216 VHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 380          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
IDH3A_RAT9.475e-5361.73Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_CAEEL3.048e-5158.64Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDH2_SCHPO1.122e-4556.55Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDHB_DICDI1.465e-4551.52Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH2_YEAST2.339e-4356.80Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
LEU3_ARCFU3.055e-4353.333-isopropylmalate dehydrogenase OS=Archaeoglobus f... [more]
IDH3B_BOVIN4.412e-4250.91Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH2_KLULA5.762e-4253.85Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH3B_MACFA9.828e-4250.91Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_RAT1.284e-4150.91Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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