CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RALME (3-isopropylmalate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=leuB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.626e-28
Identity = 65/149 (43.62%), Postives = 99/149 (66.44%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN+++ T   +  +  +V+++YP++    + +DN  M LVK P +FDV+V  N++GDI+SD  A L G +G+ PS ++      L E  HGSAPDIAGK +ANP A +LS+  MLR+ L   ++ADRI+NA+   +A+G YRTAD+
Sbjct:  188 VDKANVLE-TFQFWKDIVIDVSKEYPDVELSHMYVDNAAMQLVKAPKSFDVIVTGNMFGDILSDEAAMLTGSIGMLPSASLDANNKGLYEPSHGSAPDIAGKGVANPLATILSAAMMLRYSLNRAEQADRIENAVKKVLAQG-YRTADI 334          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_RICCN (Isocitrate dehydrogenase [NADP] OS=Rickettsia conorii GN=icd PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.626e-28
Identity = 71/155 (45.81%), Postives = 99/155 (63.87%), Query Frame = -2
Query:  264 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTS 728
            + K NIM+ +DG+   V  E+A++YP+I     +ID     L   P  FDV+V  NLYGDIISD+ A + G +GL  S NIG+   A+ EAVHGSAPDIAGK++ANP+ LL +++ ML H+   D A  I+NA   TI +G + TAD+    ++S
Sbjct:  173 LSKDNIMKFSDGVLHKVFNEIAKEYPQINNAHYIIDIGTARLATKPEIFDVIVTSNLYGDIISDVAAEISGSVGLAGSANIGQ-HYAMFEAVHGSAPDIAGKDIANPSGLLNAAIMMLVHIGQGDIATLIENAWKKTIEDGVH-TADIYNEQSSS 325          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_VIBPA (3-isopropylmalate dehydrogenase OS=Vibrio parahaemolyticus GN=leuB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.735e-28
Identity = 70/169 (41.42%), Postives = 104/169 (61.54%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS---TTSDFTKAICDHL 728
            I KAN++Q +  L+  V  E+A+ YP++    + IDN  M L+K+PA FDV++  N++GDIISD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  MLR+ L     A  I++A+   ++ G+  TADL       TTS+    I +++
Sbjct:  194 IDKANVLQSSI-LWREVVEEIAKDYPDVELSHMYIDNATMQLIKDPAQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESKFGLYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLGEEAAAQDIESAVSKALSAGEL-TADLASDKPALTTSEMGDKIAEYI 360          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SHIBS (3-isopropylmalate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=leuB PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.735e-28
Identity = 69/159 (43.40%), Postives = 101/159 (63.52%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDI GKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  193 IDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDITGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEG-IRTGDLARGAAAVSTD 349          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RHOBA (3-isopropylmalate dehydrogenase OS=Rhodopirellula baltica GN=leuB PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.735e-28
Identity = 66/150 (44.00%), Postives = 103/150 (68.67%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN+++ +  L+  V  EV A ++P++ Y+ V++D+  M L+  P+ FDV+V  N++GDI++D  + L G LG+ PS ++G+GG  L E +HGSAPDIAGK++ANP A +L++  MLRH L L D+A+ I+ A+   I +G  RT DL
Sbjct:  188 VDKANVLEPSR-LWRRVAAEVMANEFPDVQYDVVLVDSMAMHLINRPSEFDVVVTGNMFGDILTDEASMLPGSLGMLPSASLGDGGPGLYEPIHGSAPDIAGKSVANPLATILAAAMMLRHSLGLTDEAEAIEKAVAGVITDG-LRTPDL 335          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_HAHCH (3-isopropylmalate dehydrogenase OS=Hahella chejuensis (strain KCTC 2396) GN=leuB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.735e-28
Identity = 68/162 (41.98%), Postives = 102/162 (62.96%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN+++ T  L+  V  E+A++YP++    + +DN  M LV+ P  FDV+V  N++GDI+SD  A L G +G+ PS ++   G  + E  HGSAPDIAG+N+ANP A +LS+  MLR+ L   D A  I+ A+   + +G  RT D+ GSS  S  T+A+
Sbjct:  190 VDKANVLEVTV-LWREVMDELAKEYPDVELSHMYVDNAAMQLVRAPKQFDVIVTGNMFGDILSDEAAMLTGSIGMLPSASLNAAGKGMYEPCHGSAPDIAGQNMANPLATILSAAMMLRYSLAAEDAAAAIEQAVSDVLDQG-LRTRDIAGSSGESVSTQAM 349          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_DESVH (3-isopropylmalate dehydrogenase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=leuB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.735e-28
Identity = 70/149 (46.98%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN++  T  L+  V  EVA  YP++    + +DN  M LV+ PA FDV+V  NL+GDI+SD  A + G +G+ PS ++G GG AL E +HGSAPDIAG++ ANP A +LS   MLR    L  +AD I  A+   +AEG YRT D+
Sbjct:  190 VDKANVLA-TSRLWREVVEEVARDYPDVELSHMYVDNAAMQLVRWPAQFDVIVTGNLFGDILSDEAAVITGSIGMLPSASMGSGGPALFEPIHGSAPDIAGQDKANPIATILSVGMMLRLGFGLAAEADAIDAAVRRVLAEG-YRTGDI 336          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_THETH (3-isopropylmalate dehydrogenase OS=Thermus thermophilus GN=leuB PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 70/166 (42.17%), Postives = 101/166 (60.84%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + KAN+++  +  +     EV   YP++  E   +D   M LV++PA FDV+V  N++GDI+SDL + L G LGL PS ++G  G  + E VHGSAPDIAGK +ANPTA +LS+  ML H   L + A ++++A+   + E      DLGGS+ T  FT  +  HL
Sbjct:  183 VDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STRMU (3-isopropylmalate dehydrogenase OS=Streptococcus mutans GN=leuB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 70/166 (42.17%), Postives = 104/166 (62.65%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            I K N++  T  L+  +  EVA++Y ++T E  ++D+  M+++ NPA FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGK +ANP +++LS   MLR        A+ I++A+  T+ +G   T DLGG + T   T AI  +L
Sbjct:  181 IDKQNVLA-TSKLWRQIAEEVAKEYSDVTLEHQLVDSAAMVMITNPACFDVVVTENLFGDILSDESSVLPGTLGVMPSASHSESGPSLYEPIHGSAPDIAGKGIANPISMILSVAMMLRDSFGETAGAEMIEHAVNKTLTQG-ILTRDLGGLANTKQMTAAIIANL 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_THET8 (3-isopropylmalate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=leuB PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28
Identity = 70/166 (42.17%), Postives = 101/166 (60.84%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + KAN+++  +  +     EV   YP++  E   +D   M LV++PA FDV+V  N++GDI+SDL + L G LGL PS ++G  G  + E VHGSAPDIAGK +ANPTA +LS+  ML H   L + A ++++A+   + E      DLGGS+ T  FT  +  HL
Sbjct:  183 VDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGR-GTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETP--PPDLGGSAGTEAFTATVLRHL 344          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_RALME3.626e-2843.623-isopropylmalate dehydrogenase OS=Ralstonia metal... [more]
IDH_RICCN3.626e-2845.81Isocitrate dehydrogenase [NADP] OS=Rickettsia cono... [more]
LEU3_VIBPA4.735e-2841.423-isopropylmalate dehydrogenase OS=Vibrio parahaem... [more]
LEU3_SHIBS4.735e-2843.403-isopropylmalate dehydrogenase OS=Shigella boydii... [more]
LEU3_RHOBA4.735e-2844.003-isopropylmalate dehydrogenase OS=Rhodopirellula ... [more]
LEU3_HAHCH4.735e-2841.983-isopropylmalate dehydrogenase OS=Hahella chejuen... [more]
LEU3_DESVH4.735e-2846.983-isopropylmalate dehydrogenase OS=Desulfovibrio v... [more]
LEU3_THETH6.184e-2842.173-isopropylmalate dehydrogenase OS=Thermus thermop... [more]
LEU3_STRMU6.184e-2842.173-isopropylmalate dehydrogenase OS=Streptococcus m... [more]
LEU3_THET88.077e-2842.173-isopropylmalate dehydrogenase OS=Thermus thermop... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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