CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3B_PONAB (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Pongo abelii GN=IDH3B PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.284e-41
Identity = 84/165 (50.91%), Postives = 107/165 (64.85%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   C EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P  +                    G+N+ANPTA+LLS+  MLRHL L   +  I +A+   I  GK RT D+GG STT+DF K++  HL
Sbjct:  216 VHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 380          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3B_HUMAN (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Homo sapiens GN=IDH3B PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.284e-41
Identity = 84/165 (50.91%), Postives = 107/165 (64.85%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   C EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P  +                    G+N+ANPTA+LLS+  MLRHL L   +  I +A+   I  GK RT D+GG STT+DF K++  HL
Sbjct:  216 VHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVIGHL 380          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH1_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.189e-41
Identity = 84/164 (51.22%), Postives = 108/164 (65.85%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIAL---AEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            +HKANIM+  DGLF   CREVA+KYP ITY E+++DNCCM LV  P  FDV+V PNLYG+++++  AG+ GG G+ P  N+G         A A +     I  +N ANP ALLLSS  MLRHL+    ADR++ A+   IAEGK RT DLGG+STT +   A+
Sbjct:  199 VHKANIMKLADGLFLESCREVAKKYPSITYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDKIVLENKANPVALLLSSAMMLRHLQFPSFADRLETAVKKVIAEGKCRTKDLGGTSTTQEVVDAV 362          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3G_MACFA (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3G PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.199e-40
Identity = 79/165 (47.88%), Postives = 107/165 (64.85%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   CREVA +YP+IT+E +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G        A   +   IA KN+ANPTA LL+S  ML HL+LH  A  I+ A+L+++      T D+GG  TTS+  + I  H+
Sbjct:  181 VHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHI 345          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3G_BOVIN (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Bos taurus GN=IDH3G PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.199e-40
Identity = 79/165 (47.88%), Postives = 107/165 (64.85%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   CREVA +YP+IT+E +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G        A   +   IA KN+ANPTA LL+S  ML HL+LH  A  I+ A+L+++      T D+GG  TTS+  + I  H+
Sbjct:  218 VHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHI 382          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3G_HUMAN (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Homo sapiens GN=IDH3G PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.201e-39
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   CREVA +YP+IT+E +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G        A   +   IA KN+ANPTA LL+S  ML HL+LH  A  I+ A+L+++      T D+GG  TTS+  + +  H+
Sbjct:  219 VHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSEAIQDVIRHI 383          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3G_RAT (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Rattus norvegicus GN=Idh3g PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.495e-39
Identity = 78/165 (47.27%), Postives = 106/165 (64.24%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   CREVA +YP+IT++ +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G        A   +   IA KN+ANPTA LL+S  ML HL+LH  A  I+ A+L+++      T D+GG  TTS   + I  H+
Sbjct:  219 VHKANIMKLGDGLFLQCCREVAARYPQITFDSMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSQAIQDIIRHI 383          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH2_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial OS=Arabidopsis thaliana GN=IDH2 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.962e-39
Identity = 82/171 (47.95%), Postives = 109/171 (63.74%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNL------ANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   C+EVA+KYP I Y E+++DNCCM LV  P  FDV+V PNLYG+++++  AG+ GG G+ P  N+   G   A    G++    GK+       ANP ALLLSS  MLRHL+    ADR++ A+   IAEG  RT DLGG+STT +   A+  +L
Sbjct:  199 VHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIVDNCCMQLVARPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNV---GAEYAVFEQGASAGNVGKDTTEEQKNANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEGNCRTEDLGGNSTTQEVVDAVIANL 366          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3G_MOUSE (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Mus musculus GN=Idh3g PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.787e-39
Identity = 78/165 (47.27%), Postives = 105/165 (63.64%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF   CREVA  YP+IT++ +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G        A   +   IA KN+ANPTA LL+S  ML HL+LH  A  I+ A+L+++      T D+GG  TTS   + I  H+
Sbjct:  219 VHKANIMKLGDGLFLQCCREVAAHYPQITFDSMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHTPDIGGQGTTSQAIQDIIRHI 383          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3B_CAEEL (Probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C37E2.1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.735e-38
Identity = 75/163 (46.01%), Postives = 105/163 (64.42%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            +HKANIM+  DGLF   C  VA++YP+I +E ++IDN CM LV  P  FDV+VMPNLYG+II +L AGL+GG G+ P  ++G   +        S  +  G+++ANPTA++L +  ML HL L    + ++ A+   + EGK RT DLGG +TT DF  A+ D
Sbjct:  213 VHKANIMKLGDGLFLRTCEGVAKQYPKIQFESMIIDNTCMQLVSKPEQFDVMVMPNLYGNIIDNLAAGLVGGAGVVPGQSVGRDFVIFEPGSRHSFQEAMGRSIANPTAMILCAANMLNHLHLDAWGNSLRQAVADVVKEGKVRTRDLGGYATTVDFADAVID 375          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
IDH3B_PONAB1.284e-4150.91Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_HUMAN1.284e-4150.91Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH1_ARATH2.189e-4151.22Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3G_MACFA9.199e-4047.88Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3G_BOVIN9.199e-4047.88Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3G_HUMAN1.201e-3947.27Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3G_RAT3.495e-3947.27Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH2_ARATH5.962e-3947.95Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3G_MOUSE7.787e-3947.27Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3B_CAEEL1.735e-3846.01Probable isocitrate dehydrogenase [NAD] subunit be... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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