CX296791
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: TTUC4_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC' OS=Agrobacterium vitis GN=ttuC' PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23 Identity = 54/165 (32.73%), Postives = 95/165 (57.58%), Query Frame = -2 Query: 240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728 + K+N + ++ + EV++++P++T++++++D + + P + D +V NL+ DI+SDL L G LG+ P+ NI ++ E +HGSA DI GK +ANP A ++ ML HL D A R+ +A+ + E T D+GG++ T T A+C+ Sbjct: 187 VTKSNAQRHGMVMWDEIAAEVSKEFPDVTWDKMLVDAMTVRMTLKPQSLDTIVATNLHADILSDLAGALAGSLGVAPTANIDPERRFPSMFEPIHGSAFDITGKGIANPVATFWTAAQMLEHLGEKDAATRLMSAV-ERVTEAGILTPDVGGTANTQQVTDAVCE 350
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: TTUC2_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC OS=Agrobacterium vitis GN=ttuC PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22 Identity = 54/165 (32.73%), Postives = 95/165 (57.58%), Query Frame = -2 Query: 240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728 + K+N + ++ + EV++++P++T++++++D + + P + D +V NL+ DI+SDL L G LG+ P+ NI ++ E +HGSA DI GK +ANP A ++ ML HL D A R+ +A+ + E T D+GG++ T T A+C+ Sbjct: 187 VTKSNAQRHGMVMWDEIAAEVSKEFPDVTWDKMLVDAMTVRMTLKPQSLDTIVATNLHADILSDLAGALAGSLGVAPTANIDPERRFPSMFEPIHGSAFDITGKGIANPVATFWTAAQMLEHLGEKDAATRLMSAV-ERVTEAGILTPDVGGTADTQQVTDAVCE 350
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: TTUC1_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC OS=Agrobacterium vitis GN=ttuC PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22 Identity = 55/165 (33.33%), Postives = 94/165 (56.97%), Query Frame = -2 Query: 240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728 + K+N + ++ + EVA ++P++T++++++D + + P D +V NL+ DI+SDL L G LG+ P+ NI ++ E +HGSA DI GK +ANP A ++ ML HL D A R+ +A+ + E T D+GG++ T T+A+C+ Sbjct: 187 VTKSNAQRHGMVMWDEIAAEVATEFPDVTWDKMLVDAMTVRMTLKPETLDTIVATNLHADILSDLAGALAGSLGVAPTANIDPERRFPSMFEPIHGSAFDITGKGIANPIATFWTAAQMLEHLGERDAAARLMSAV-ERVTEAGILTPDVGGTANTRQVTEAVCN 350
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CLAM3 (3-isopropylmalate dehydrogenase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=leuB PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22 Identity = 56/141 (39.72%), Postives = 87/141 (61.70%), Query Frame = -2 Query: 312 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 728 +HK N++ L+ VA ++P++ + + +D + LV +P+ FDV+V NL+GDII+DL A + GG+GL S N+ G ++ E VHGSAPDIAG+ A+PTA +LS +L HL L + A R+ A+ + +A Sbjct: 188 VHKTNVLTFAGSLWQRTVDRVAAEHPDVAVDYLHVDATMIFLVTDPSRFDVIVSDNLFGDIITDLAAAISGGIGLAASGNVNPTGAFPSMFEPVHGSAPDIAGQQKADPTAAILSVSLLLDHLGLPEAAARVTAAVSADLA 328
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SYNPX (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain WH8102) GN=leuB PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22 Identity = 64/166 (38.55%), Postives = 98/166 (59.04%), Query Frame = -2 Query: 234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728 + KAN++ + L+ +A Y ++ + +DN M LV++P FDVL+ NL+GDI+SD A L G +G+ PS ++G L E VHGSAPDIAG++ ANP A++LS+ MLR L+ + A ++ A+ +A G +RT DL T+ +A+ D L Sbjct: 190 VDKANVLDVSQ-LWRDRVDAMAPAYSDVEVSHMYVDNAAMQLVRSPRQFDVLLTGNLFGDILSDEAAMLTGSIGMLPSASLGSDCPGLFEPVHGSAPDIAGQDKANPMAMVLSAAMMLRIGLKQTEAAADLEAAVDKVLAAG-FRTGDLMAEGCTALGCRAMGDAL 353
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RHOPB (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris (strain BisB18) GN=leuB PE=3 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22 Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = -2 Query: 267 IHKANIMQKTDGLF*SVCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 728 + K N+M K+ L+ V V AE Y ++ E + D+ M LVK P FDV+V NL+GDI+SD+ A L G LG+ PS ++G ++ E VHGSAPDIAGK LANP A+L S LR+ L++ + AD++ AI + +A+G RTAD+ +T Sbjct: 191 MEKRNVM-KSGVLWNEVVTRVHAEDYKDVQLEHQLADSGGMNLVKWPKQFDVIVTDNLFGDILSDIAAMLTGSLGMLPSASLGAVDANTGKRKSMYEPVHGSAPDIAGKGLANPVAMLASFGMALRYSLDMGELADKLDAAIAAVLAKG-LRTADIKSEGST 350
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_DESPS (3-isopropylmalate dehydrogenase OS=Desulfotalea psychrophila GN=leuB PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22 Identity = 62/149 (41.61%), Postives = 91/149 (61.07%), Query Frame = -2 Query: 285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728 + KAN++ T L+ V EVA++YP++ + +DN M LV++P FDV++ N++GDIISD A L G +GL S ++ L E GSAPDIAG+ +ANP A +LS+ MLR+ L + AD I+ A+ T+ G TAD+ Sbjct: 190 VDKANVLT-TMVLWREVVLEVAKEYPDVKLNHIYVDNATMQLVRDPHQFDVMLCGNMFGDIISDEAAMLTGSMGLLASASLNTENFGLFEPAGGSAPDIAGQGIANPIAEILSAAMMLRYSLGYGEAADAIEAAVEKTLDRG-ICTADI 336
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CORU7 (3-isopropylmalate dehydrogenase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=leuB PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22 Identity = 56/154 (36.36%), Postives = 90/154 (58.44%), Query Frame = -2 Query: 282 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA---EGKYRTADLG 728 +HK N++ GL+ + +++P++ + ID + +V +P+ +DV+V NL+GDI++DL + GG+GL S NI ++ E VHGSAPDIAG+ +A+P A +LS MLRHL A++I+ A+L A RT ++G Sbjct: 177 VHKTNVLVNAGGLWQRAIETIGKEFPDVEVDYNHIDAATIYMVTDPSRYDVIVTDNLFGDILTDLAGAVTGGIGLAASGNIDPTHNNPSMFEPVHGSAPDIAGQGIADPCAAILSVALMLRHLGDEANAEKIEKAVLDEAAGRDGSPIRTTEVG 330
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RHOP2 (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris (strain HaA2) GN=leuB PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22 Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = -2 Query: 267 IHKANIMQKTDGLF*SVCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE------GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 728 + K N+M KT L+ V +V A +Y ++ E + D+ M LVK P FDV+V NL+GD++SD+ A L G LG+ PS ++G A+ E VHGSAPDIAGK LANP A+L S LR+ L++ + AD++ AI +A G RTAD+ +T Sbjct: 191 MEKRNVM-KTGVLWNEVITQVHAREYKDVQLEHQLADSGGMNLVKWPKQFDVIVTDNLFGDMLSDIAAMLTGSLGMLPSASLGAVDDTTGKRKAMYEPVHGSAPDIAGKGLANPVAMLASFGMALRYSLDMGELADKLDEAIAVVLARG-LRTADIKSEGST 350
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_MYCGI (3-isopropylmalate dehydrogenase OS=Mycobacterium gilvum (strain PYR-GCK) GN=leuB PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22 Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = -2 Query: 282 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE--GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLG 728 +HK N++ L+ + VA +YPE+ +D + +V +P FDV+V NL+GDII+DL A + GG+GL S NI ++ E VHGSAPDIAG+ +A+PTA ++S +L H+ D A R+ A+ L+T + K T +G Sbjct: 176 VHKNNVLTNAGSLWWRTVQAVAAEYPEVEVAYQHVDAATIHMVTDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATLTNPSMFEPVHGSAPDIAGQGIADPTAAIMSVSLLLAHMAEIDAAARVDKAVAEHLATRGDEKLSTTQVG 329 The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 372
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bpback to top |