CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: TTUC4_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC' OS=Agrobacterium vitis GN=ttuC' PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 54/165 (32.73%), Postives = 95/165 (57.58%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + K+N  +    ++  +  EV++++P++T++++++D   + +   P + D +V  NL+ DI+SDL   L G LG+ P+ NI       ++ E +HGSA DI GK +ANP A   ++  ML HL   D A R+ +A+   + E    T D+GG++ T   T A+C+
Sbjct:  187 VTKSNAQRHGMVMWDEIAAEVSKEFPDVTWDKMLVDAMTVRMTLKPQSLDTIVATNLHADILSDLAGALAGSLGVAPTANIDPERRFPSMFEPIHGSAFDITGKGIANPVATFWTAAQMLEHLGEKDAATRLMSAV-ERVTEAGILTPDVGGTANTQQVTDAVCE 350          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: TTUC2_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC OS=Agrobacterium vitis GN=ttuC PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 54/165 (32.73%), Postives = 95/165 (57.58%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + K+N  +    ++  +  EV++++P++T++++++D   + +   P + D +V  NL+ DI+SDL   L G LG+ P+ NI       ++ E +HGSA DI GK +ANP A   ++  ML HL   D A R+ +A+   + E    T D+GG++ T   T A+C+
Sbjct:  187 VTKSNAQRHGMVMWDEIAAEVSKEFPDVTWDKMLVDAMTVRMTLKPQSLDTIVATNLHADILSDLAGALAGSLGVAPTANIDPERRFPSMFEPIHGSAFDITGKGIANPVATFWTAAQMLEHLGEKDAATRLMSAV-ERVTEAGILTPDVGGTADTQQVTDAVCE 350          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: TTUC1_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC OS=Agrobacterium vitis GN=ttuC PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 55/165 (33.33%), Postives = 94/165 (56.97%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + K+N  +    ++  +  EVA ++P++T++++++D   + +   P   D +V  NL+ DI+SDL   L G LG+ P+ NI       ++ E +HGSA DI GK +ANP A   ++  ML HL   D A R+ +A+   + E    T D+GG++ T   T+A+C+
Sbjct:  187 VTKSNAQRHGMVMWDEIAAEVATEFPDVTWDKMLVDAMTVRMTLKPETLDTIVATNLHADILSDLAGALAGSLGVAPTANIDPERRFPSMFEPIHGSAFDITGKGIANPIATFWTAAQMLEHLGERDAAARLMSAV-ERVTEAGILTPDVGGTANTRQVTEAVCN 350          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CLAM3 (3-isopropylmalate dehydrogenase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=leuB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 56/141 (39.72%), Postives = 87/141 (61.70%), Query Frame = -2
Query:  312 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 728
            +HK N++     L+      VA ++P++  + + +D   + LV +P+ FDV+V  NL+GDII+DL A + GG+GL  S N+   G   ++ E VHGSAPDIAG+  A+PTA +LS   +L HL L + A R+  A+ + +A
Sbjct:  188 VHKTNVLTFAGSLWQRTVDRVAAEHPDVAVDYLHVDATMIFLVTDPSRFDVIVSDNLFGDIITDLAAAISGGIGLAASGNVNPTGAFPSMFEPVHGSAPDIAGQQKADPTAAILSVSLLLDHLGLPEAAARVTAAVSADLA 328          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SYNPX (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain WH8102) GN=leuB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 64/166 (38.55%), Postives = 98/166 (59.04%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + KAN++  +  L+      +A  Y ++    + +DN  M LV++P  FDVL+  NL+GDI+SD  A L G +G+ PS ++G     L E VHGSAPDIAG++ ANP A++LS+  MLR  L+  + A  ++ A+   +A G +RT DL     T+   +A+ D L
Sbjct:  190 VDKANVLDVSQ-LWRDRVDAMAPAYSDVEVSHMYVDNAAMQLVRSPRQFDVLLTGNLFGDILSDEAAMLTGSIGMLPSASLGSDCPGLFEPVHGSAPDIAGQDKANPMAMVLSAAMMLRIGLKQTEAAADLEAAVDKVLAAG-FRTGDLMAEGCTALGCRAMGDAL 353          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RHOPB (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris (strain BisB18) GN=leuB PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = -2
Query:  267 IHKANIMQKTDGLF*SVCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 728
            + K N+M K+  L+  V   V AE Y ++  E  + D+  M LVK P  FDV+V  NL+GDI+SD+ A L G LG+ PS ++G          ++ E VHGSAPDIAGK LANP A+L S    LR+ L++ + AD++  AI + +A+G  RTAD+    +T
Sbjct:  191 MEKRNVM-KSGVLWNEVVTRVHAEDYKDVQLEHQLADSGGMNLVKWPKQFDVIVTDNLFGDILSDIAAMLTGSLGMLPSASLGAVDANTGKRKSMYEPVHGSAPDIAGKGLANPVAMLASFGMALRYSLDMGELADKLDAAIAAVLAKG-LRTADIKSEGST 350          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_DESPS (3-isopropylmalate dehydrogenase OS=Desulfotalea psychrophila GN=leuB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 62/149 (41.61%), Postives = 91/149 (61.07%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN++  T  L+  V  EVA++YP++    + +DN  M LV++P  FDV++  N++GDIISD  A L G +GL  S ++      L E   GSAPDIAG+ +ANP A +LS+  MLR+ L   + AD I+ A+  T+  G   TAD+
Sbjct:  190 VDKANVLT-TMVLWREVVLEVAKEYPDVKLNHIYVDNATMQLVRDPHQFDVMLCGNMFGDIISDEAAMLTGSMGLLASASLNTENFGLFEPAGGSAPDIAGQGIANPIAEILSAAMMLRYSLGYGEAADAIEAAVEKTLDRG-ICTADI 336          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CORU7 (3-isopropylmalate dehydrogenase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=leuB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 56/154 (36.36%), Postives = 90/154 (58.44%), Query Frame = -2
Query:  282 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA---EGKYRTADLG 728
            +HK N++    GL+      + +++P++  +   ID   + +V +P+ +DV+V  NL+GDI++DL   + GG+GL  S NI       ++ E VHGSAPDIAG+ +A+P A +LS   MLRHL     A++I+ A+L   A       RT ++G
Sbjct:  177 VHKTNVLVNAGGLWQRAIETIGKEFPDVEVDYNHIDAATIYMVTDPSRYDVIVTDNLFGDILTDLAGAVTGGIGLAASGNIDPTHNNPSMFEPVHGSAPDIAGQGIADPCAAILSVALMLRHLGDEANAEKIEKAVLDEAAGRDGSPIRTTEVG 330          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RHOP2 (3-isopropylmalate dehydrogenase OS=Rhodopseudomonas palustris (strain HaA2) GN=leuB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22
Identity = 69/162 (42.59%), Postives = 97/162 (59.88%), Query Frame = -2
Query:  267 IHKANIMQKTDGLF*SVCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE------GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTT 728
            + K N+M KT  L+  V  +V A +Y ++  E  + D+  M LVK P  FDV+V  NL+GD++SD+ A L G LG+ PS ++G          A+ E VHGSAPDIAGK LANP A+L S    LR+ L++ + AD++  AI   +A G  RTAD+    +T
Sbjct:  191 MEKRNVM-KTGVLWNEVITQVHAREYKDVQLEHQLADSGGMNLVKWPKQFDVIVTDNLFGDMLSDIAAMLTGSLGMLPSASLGAVDDTTGKRKAMYEPVHGSAPDIAGKGLANPVAMLASFGMALRYSLDMGELADKLDEAIAVVLARG-LRTADIKSEGST 350          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_MYCGI (3-isopropylmalate dehydrogenase OS=Mycobacterium gilvum (strain PYR-GCK) GN=leuB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.276e-22
Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = -2
Query:  282 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE--GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLG 728
            +HK N++     L+    + VA +YPE+      +D   + +V +P  FDV+V  NL+GDII+DL A + GG+GL  S NI       ++ E VHGSAPDIAG+ +A+PTA ++S   +L H+   D A R+  A+   L+T  + K  T  +G
Sbjct:  176 VHKNNVLTNAGSLWWRTVQAVAAEYPEVEVAYQHVDAATIHMVTDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATLTNPSMFEPVHGSAPDIAGQGIADPTAAIMSVSLLLAHMAEIDAAARVDKAVAEHLATRGDEKLSTTQVG 329          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
TTUC4_AGRVI7.823e-2332.73Probable tartrate dehydrogenase/decarboxylase ttuC... [more]
TTUC2_AGRVI1.022e-2232.73Probable tartrate dehydrogenase/decarboxylase ttuC... [more]
TTUC1_AGRVI1.022e-2233.33Probable tartrate dehydrogenase/decarboxylase ttuC... [more]
LEU3_CLAM31.022e-2239.723-isopropylmalate dehydrogenase OS=Clavibacter mic... [more]
LEU3_SYNPX1.743e-2238.553-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_RHOPB1.743e-2242.593-isopropylmalate dehydrogenase OS=Rhodopseudomona... [more]
LEU3_DESPS1.743e-2241.613-isopropylmalate dehydrogenase OS=Desulfotalea ps... [more]
LEU3_CORU71.743e-2236.363-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_RHOP22.276e-2242.593-isopropylmalate dehydrogenase OS=Rhodopseudomona... [more]
LEU3_MYCGI2.276e-2238.313-isopropylmalate dehydrogenase OS=Mycobacterium g... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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