CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH3_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.865e-38
Identity = 82/164 (50.00%), Postives = 105/164 (64.02%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPD--IAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            +HKANIM+  DGLF   CREVA+ Y  ITY E+++DNCCM LV  P  FDV+V PNLYG++I++  AG+ GG G+ P  N+G E  I    A  G+  +  +  +  ANP ALLLSS  MLRHL     ADR++ A+   I EGKYRT DLGG  TT +   A+
Sbjct:  200 VHKANIMKLADGLFLESCREVAKHYSGITYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLIANTAAGIAGGTGVMPGGNVGAEHAIFEQGASAGNVGNDKMVEQKKANPVALLLSSAMMLRHLRFPTFADRLETAVKQVIKEGKYRTKDLGGDCTTQEVVDAV 363          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_METTH (3-isopropylmalate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=leuB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.124e-37
Identity = 81/165 (49.09%), Postives = 108/165 (65.45%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKAN+++KTDG+F     +VA +YP++   +  +D   M L+  P  F  +V  NL+GDI+SD  AGLIGGLGL PS NIGE   AL E VHGSAP IAGKN+ANPTA++L++  ML+HL    +A +I+ A+  T+AEG   T DLGG   T +    I  HL
Sbjct:  165 VHKANVLKKTDGIFRDEFYKVASEYPQMEATDYYVDATAMYLITQPQEFQTIVTTNLFGDILSDEAAGLIGGLGLAPSANIGEKN-ALFEPVHGSAPQIAGKNIANPTAMILTTTLMLKHLNKKQEAQKIEKALQKTLAEGLV-TPDLGGKLGTMEMAAEIARHL 327          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH1_AJECA (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Ajellomyces capsulata GN=IDH1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.124e-37
Identity = 77/165 (46.67%), Postives = 104/165 (63.03%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            IHKANIM+  DGLF S   +VAE YP +   ++++DN  M  V  P  FDV+VMPNLYG I+S++ A L+GG G+ P CN+G               DI GK+ ANPTAL+LS   +LRHL L + A+RI  A+   I EG  RT D+GG ++T +FT+A+ D +
Sbjct:  220 IHKANIMKLADGLFRSTFHKVAESYPTLETNDMIVDNASMQAVARPQQFDVMVMPNLYGGILSNVGAALVGGPGIVPGCNMGRDVAVFEPGCRHVGLDIKGKDQANPTALILSGSMLLRHLGLDEHANRISKAVYDVIGEGVTRTRDMGGQASTHEFTRAVLDKM 384          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_THET8 (Isocitrate dehydrogenase [NADP] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=icd PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 9.519e-37
Identity = 81/166 (48.80%), Postives = 113/166 (68.07%), Query Frame = -2
Query:  234 KANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGG---SSTTSDFTKAICDHL 722
            K+NIM+  +G       +VA++YP+I    +++DN    LVK P  F+V+V  N+ GDI+SDL +GLIGGLG  PS NIG   +A+ EAVHGSAP  AGKN+ NPTA+LLS+V MLR+LE    AD I+NA+L T+ EG+  T D+ G    + T+++T+AI  +L
Sbjct:  191 KSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIG-NEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNL 355          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH1_KLULA (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Kluyveromyces lactis GN=IDH1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.617e-36
Identity = 78/166 (46.99%), Postives = 104/166 (62.65%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREV-AEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF +   E+ A +YPE+  + +++DN  M  V  P  FDVLV PNLYG I+ ++ + LIGG GL P  N G               DI G+N+ANPTA++LSS  MLRHL L+  ADRI  A    I+EGK  T D+GGS++TS+FT A+ + L
Sbjct:  193 VHKANIMKLGDGLFRNTVNEIGANEYPELDVKNIIVDNASMQAVAKPHQFDVLVTPNLYGSILGNIGSALIGGPGLVPGANFGREYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLRHLGLNAYADRISKATYDVISEGKSTTRDIGGSASTSEFTNAVIEKL 358          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH1_YEAST (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=IDH1 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.375e-35
Identity = 77/166 (46.39%), Postives = 104/166 (62.65%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKANIM+  DGLF ++  E+ +K YP+I    +++DN  M  V  P  FDVLV P++YG I+ ++ A LIGG GL    N G               DI G+N+ANPTA++LSS  ML HL L++ A RI  A+  TIAEGK+ T D+GGSS+T+DFT  I + L
Sbjct:  192 VHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRISKAVHETIAEGKHTTRDIGGSSSTTDFTNEIINKL 357          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_METJA (3-isopropylmalate/3-methylmalate dehydrogenase OS=Methanocaldococcus jannaschii GN=leuB PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.062e-35
Identity = 78/160 (48.75%), Postives = 108/160 (67.50%), Query Frame = -2
Query:  246 HKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 725
            HKAN+++ TDGLF  +  +VAE+Y +I  E+  ID   M ++  P  FDV+V  NL+GDI+SD  AG +GGLGL PS NIG+    L E VHGSAPDIAGK +ANPTA +LS+V MLR+L  ++ AD+++ A+   +A G   T DLGG+  T +  + +
Sbjct:  169 HKANVLKLTDGLFKKIFYKVAEEYDDIKAEDYYIDAMNMYIITKPQVFDVVVTSNLFGDILSDGAAGTVGGLGLAPSANIGDEH-GLFEPVHGSAPDIAGKKIANPTATILSAVLMLRYLGEYEAADKVEKALEEVLALG-LTTPDLGGNLNTFEMAEEV 326          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH1_SCHPO (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Schizosaccharomyces pombe GN=idh1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.386e-34
Identity = 78/165 (47.27%), Postives = 98/165 (59.39%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            IHKANIM+  DGLF     +VA  Y  IT +++++DN  M  V  P  FDVLVMPNLYG I+S++ + L+GG G+ P  N G                I G+  ANPTA +LS+  MLRHL L D AD I  A  S I EGK  T DLGGS++T DFT AI + +
Sbjct:  189 IHKANIMKLADGLFRRTFYDVANGYDAITPKDLIVDNASMQAVSRPQQFDVLVMPNLYGSILSNIGSALVGGPGVIPGANFGRDYALFEPGCRHVGLSITGRGEANPTAAILSACLMLRHLGLKDYADLINAATYSVIEEGKTLTKDLGGSASTGDFTHAILERM 353          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LYS12_YEAST (Homoisocitrate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=LYS12 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.775e-34
Identity = 73/168 (43.45%), Postives = 103/168 (61.31%), Query Frame = -2
Query:  234 HKANIMQKTDGLF*SVCREVAE----KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 725
            HK+N++ ++DGLF  +C+EV E    KY +I Y E ++D+    L + P  FDV+V PNLYGDI+SD  A L+G LG+ PS N+G   I + E  HGSAPDIAGK +ANP A + S+  ML  L  ++ A  I  A+ + + EG  +T DLGG ++T      +   L
Sbjct:  205 HKSNVLSQSDGLFREICKEVYESNKDKYGQIKYNEQIVDSMVYRLFREPQCFDVIVAPNLYGDILSDGAAALVGSLGVVPSANVGP-EIVIGEPCHGSAPDIAGKGIANPIATIRSTALMLEFLGHNEAAQDIYKAVDANLREGSIKTPDLGGKASTQQVVDDVLSRL 371          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LYS12_SCHPO (Probable homoisocitrate dehydrogenase OS=Schizosaccharomyces pombe GN=lys12 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.851e-34
Identity = 76/164 (46.34%), Postives = 97/164 (59.15%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAE---KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            IHK+N+M  TDGLF   CR        Y  I  +E ++D+    L + P  FDV+V PNLYGDI+SD  A LIG LGL PS N+G+    ++E VHGSAPDIAG+ +ANP A   S   ML  +   D A  I  A+   + EGK  T DLGG S T++ T A+
Sbjct:  194 IHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGD-NFVMSEPVHGSAPDIAGRGIANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAV 356          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
IDH3_ARATH3.865e-3850.00Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
LEU3_METTH1.124e-3749.093-isopropylmalate dehydrogenase OS=Methanobacteriu... [more]
IDH1_AJECA1.124e-3746.67Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
IDH_THET89.519e-3748.80Isocitrate dehydrogenase [NADP] OS=Thermus thermop... [more]
IDH1_KLULA3.617e-3646.99Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
IDH1_YEAST1.375e-3546.39Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
LEU3_METJA3.062e-3548.753-isopropylmalate/3-methylmalate dehydrogenase OS=... [more]
IDH1_SCHPO3.386e-3447.27Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
LYS12_YEAST5.775e-3443.45Homoisocitrate dehydrogenase, mitochondrial OS=Sac... [more]
LYS12_SCHPO9.851e-3446.34Probable homoisocitrate dehydrogenase OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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