CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_MYCSJ (3-isopropylmalate dehydrogenase OS=Mycobacterium sp. (strain JLS) GN=leuB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 57/154 (37.01%), Postives = 91/154 (59.09%), Query Frame = -2
Query:  282 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLG 728
            +HK N++     L+    +EV  +YP++      +D+  + +V +P  FDV+V  NL+GDI++DL A + GG+GL  S NI       ++ E VHGSAPDIAG+ +A+PTA ++S   +L H+   D A R+  A+   LS+  + +  TA +G
Sbjct:  176 VHKNNVLTFAGALWWRTVQEVGAEYPDVEIAYQHVDSAMIHIVTDPGRFDVIVTDNLFGDIVTDLAAAVCGGIGLAASGNIDATRTNPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLAHVGETDAAARVDKAVEAHLSSRGDQELGTAAVG 329          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACCA (3-isopropylmalate dehydrogenase OS=Bacillus caldotenax GN=leuB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = -2
Query:  372 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR 728
            + KAN++  +  L+  V  EVA ++P++T E +++D   M L++ P  FDV+V  N++GDI+SD  + L G LG+ PS ++   G +L E VHGSAPDIAG N ANP A +LS+  MLR
Sbjct:  189 VDKANVLSSSR-LWREVAEEVANEFPDVTLEHMLVD-MRMQLIRAPKQFDVIVTENMFGDILSDEASMLSGSLGMLPSASLSASGPSLYEPVHGSAPDIAGMNKANPIAAILSAAMMLR 305          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_CEPAC (3-isopropylmalate dehydrogenase OS=Cephalosporium acremonium GN=LEU2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 62/157 (39.49%), Postives = 97/157 (61.78%), Query Frame = -2
Query:  234 AEKYPEITYEEVVIDNCCMMLVKNPAAFD-VLVMPNLYGDIISDLCAGLIGGLGLTPSCNI----GEG--GIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTI---AEG--KYRTADLGGSSTTSDFTKAICDHL 665
            A+++P+IT +  + D+  M++V++P  F+ V+   N +GDI+SD+   + G LGL PS ++    GEG     + E VHGSAPDI+GK LANP A +LS   MLR+ + L  +A  ++ A++  +   +EG  + RT DLGG +T S    A+C+ L
Sbjct:  215 AKEFPDITLQHQLADSMAMLMVRDPRRFNGVIHTDNTFGDILSDISGAITGTLGLMPSASLCGVPGEGHRSNGIYEPVHGSAPDISGKGLANPVAQILSVAMMLRYSMGLEKEATAVERAVVKVLDAKSEGGLEIRTGDLGGRATCSQVGDAVCEVL 371          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RHOS4 (3-isopropylmalate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=leuB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.475e-21
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = -2
Query:  279 KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI-----ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGG 659
            +YP++    +  DN  M LV+ P  FDV+V  NL+GDI+SD  A L G LG+ PS ++G         AL E VHGSAPDIAG+  ANP A +LS    LR+  ++ ++A R++ A+ + +A+G  RTADL G
Sbjct:  214 EYPDVELSHMYADNGAMQLVRWPRQFDVIVTDNLFGDILSDCAAMLTGSLGMLPSASLGAPMANGRPKALYEPVHGSAPDIAGQGKANPIACILSFAMALRYSFDMGEEATRLEKAVETVLADG-VRTADLMG 345          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_DEHSC (3-isopropylmalate dehydrogenase OS=Dehalococcoides sp. (strain CBDB1) GN=leuB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.475e-21
Identity = 61/155 (39.35%), Postives = 92/155 (59.35%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNI------GEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN++  +  L+  +  EVA+ YPE+  E V++D C M L+  P  FDV+V  NL+GDI++D  + L G +G+ PS ++      G     L E +HGSAP IA +N+ANP A +LS   MLR+   L  +A  I++A+   +A G Y T D+
Sbjct:  190 VDKANVLLSSR-LWRQIVIEVAKDYPEVKVEHVLVDACAMKLILAPTYFDVIVTENLFGDILTDEASMLAGSMGMLPSASLAGIPAKGTKIFGLYEPIHGSAPTIAKQNIANPIATILSIAMMLRYSCGLETEAVEIESAVDKVLAAG-YATIDI 342          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_DEHE1 (3-isopropylmalate dehydrogenase OS=Dehalococcoides ethenogenes (strain 195) GN=leuB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.475e-21
Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNI------GEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN++  +  L+  +  E+A+ YP+IT E +++D C M L+  P  FDV+V  N++GDI++D  + L G +G+ PS ++      G     L E +HGSAP IA +N+ANP A +LS   MLR+   L  +A  I+ A+   +A G Y T D+
Sbjct:  190 VDKANVLLSSR-LWRQIVIEIAKDYPDITVEHILVDACAMKLILAPTYFDVIVTENMFGDILTDEASMLAGSMGMLPSASLAGIPAKGTKTFGLYEPIHGSAPTIAKQNIANPIATILSIAMMLRYSCGLETEAAEIEAAVDKVLAAG-YATIDI 342          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_PSEPK (3-isopropylmalate dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=leuB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 56/149 (37.58%), Postives = 87/149 (58.39%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + KAN++  +  L+  V  +VA+ YP++    + +DN  M LV+ P  FDV+V  N++GDI+SD  + L G +G+ PS ++      + E  HGSAPDIAG  +ANP A +LS   MLR+       A+ I+ A+   + +G  RT D+
Sbjct:  190 VDKANVLASSQ-LWREVVEDVAKDYPDVELSHMYVDNAAMQLVRAPKQFDVMVTDNMFGDILSDEASMLTGSIGMLPSASLDADNKGMYEPCHGSAPDIAGLGIANPLATILSVSMMLRYSFNQSAAAEAIEKAVSLVLDQG-LRTGDI 336          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_MYCPA (3-isopropylmalate dehydrogenase OS=Mycobacterium paratuberculosis GN=leuB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 58/154 (37.66%), Postives = 87/154 (56.49%), Query Frame = -2
Query:  282 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAI---LSTIAEGKYRTADLG 728
            +HK N++     L+  +  EV   YP++      ID   + +V +P  FDV+V  NL+GDII+DL A + GG+GL  S NI       ++ E VHGSAPDIAG+ +A+PTA ++S   +L HL     A R+  A+   L+T    +  T ++G
Sbjct:  176 VHKTNVLTFAGKLWSRIVAEVGRDYPDVEVAYQHIDAATIFMVTDPGRFDVIVTDNLFGDIITDLSAAVCGGIGLAASGNIDGTRTNPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLAHLGEDAAATRVDRAVERYLATRGNERPATTEVG 329          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: TTUC_ECOLI (Probable tartrate dehydrogenase/decarboxylase OS=Escherichia coli (strain K12) GN=yeaU PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.517e-21
Identity = 62/148 (41.89%), Postives = 83/148 (56.08%), Query Frame = -2
Query:  243 VAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI--ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHD-KADRIQNAILSTIAE---GKYRTADLGGSSTTSDFTKAIC 668
            +AE YPEI +++  ID  C   V  P  FDV+V  NL+GDI+SDL     G +G+ PS N+       +L E VHGSAPDI GKN+ANP A + +   ML  L   D +  +  N IL+ I E      +T D+ G++TT     AIC
Sbjct:  209 MAENYPEIRWDKQHIDILCARFVMQPERFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTFPSLFEPVHGSAPDIYGKNIANPIATIWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIAHGPKTPDMKGNATTPQVADAIC 356          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SACEN (3-isopropylmalate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=leuB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.517e-21
Identity = 54/141 (38.30%), Postives = 85/141 (60.28%), Query Frame = -2
Query:  312 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 728
            +HK N++     L+  V  EV+ ++P++T     +D   + +V +P+ FDV+V  NL+GDII+DL   + GG+GL  S NI       ++ E VHGSAPDIAG+  A+PTA +LS   +L H+   + A R++ A+   +A
Sbjct:  177 VHKTNVLTHAGSLWSRVVEEVSLQHPDVTVAYQHVDATTIHMVTDPSRFDVIVTDNLFGDIITDLAGAITGGIGLAASGNIDATRRNPSMFEPVHGSAPDIAGQGTADPTAAVLSVALLLDHVGQSEAARRVEAAVAFDLA 317          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_MYCSJ6.623e-2237.013-isopropylmalate dehydrogenase OS=Mycobacterium s... [more]
LEU3_BACCA6.623e-2245.383-isopropylmalate dehydrogenase OS=Bacillus caldot... [more]
LEU3_CEPAC8.650e-2239.493-isopropylmalate dehydrogenase OS=Cephalosporium ... [more]
LEU3_RHOS41.475e-2144.363-isopropylmalate dehydrogenase OS=Rhodobacter sph... [more]
LEU3_DEHSC1.475e-2139.353-isopropylmalate dehydrogenase OS=Dehalococcoides... [more]
LEU3_DEHE11.475e-2138.063-isopropylmalate dehydrogenase OS=Dehalococcoides... [more]
LEU3_PSEPK1.927e-2137.583-isopropylmalate dehydrogenase OS=Pseudomonas put... [more]
LEU3_MYCPA1.927e-2137.663-isopropylmalate dehydrogenase OS=Mycobacterium p... [more]
TTUC_ECOLI2.517e-2141.89Probable tartrate dehydrogenase/decarboxylase OS=E... [more]
LEU3_SACEN2.517e-2138.303-isopropylmalate dehydrogenase OS=Saccharopolyspo... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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