CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BRUAB (3-isopropylmalate dehydrogenase OS=Brucella abortus GN=leuB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = -2
Query:  240 EKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 662
            EK+ ++  E ++ D   M LV+ P  FDV++  NL+GD++SD+ A L G LG+ PS ++G          AL E VHGSAPDIAGK +ANP A++ S    LR+   L  +ADR++ AI   + +G  RTAD+     T   T  + D
Sbjct:  213 EKHADVQLEHMLADAGGMQLVRWPKQFDVILTDNLFGDLLSDVAAMLTGSLGMLPSASLGAADSKTGKRKALYEPVHGSAPDIAGKGIANPIAMIASLAMCLRYSFGLVAEADRLEAAIAGVLDDG-IRTADIWSEGNTKVGTTEMGD 359          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BRUA2 (3-isopropylmalate dehydrogenase OS=Brucella abortus (strain 2308) GN=leuB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.130e-20
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = -2
Query:  240 EKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 662
            EK+ ++  E ++ D   M LV+ P  FDV++  NL+GD++SD+ A L G LG+ PS ++G          AL E VHGSAPDIAGK +ANP A++ S    LR+   L  +ADR++ AI   + +G  RTAD+     T   T  + D
Sbjct:  213 EKHADVQLEHMLADAGGMQLVRWPKQFDVILTDNLFGDLLSDVAAMLTGSLGMLPSASLGAADSKTGKRKALYEPVHGSAPDIAGKGIANPIAMIASLAMCLRYSFGLVAEADRLEAAIAGVLDDG-IRTADIWSEGNTKVGTTEMGD 359          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RHILO (3-isopropylmalate dehydrogenase OS=Rhizobium loti GN=leuB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.783e-20
Identity = 60/156 (38.46%), Postives = 95/156 (60.90%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAE-KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI------ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + K N+M K+  L+  V  +  + +Y ++  + ++ D   M LV+ P  FDV+V  NL+GD++SD+ A L G +G+ PS ++G   +      AL E VHGSAPDIAGK +ANP A++ S    LR+   + D+ADR++ AI + + +G  RT D+
Sbjct:  191 MEKRNVM-KSGVLWNEVVTQTHKARYADVKLDHMLADAGGMQLVRWPKQFDVIVTDNLFGDMLSDIAAMLTGSIGMLPSASLGAPDVKTKKRKALYEPVHGSAPDIAGKGIANPIAMIASFAMCLRYSFGMVDEADRLEGAIAAVLDQG-LRTKDI 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RHIL3 (3-isopropylmalate dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=leuB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 64/156 (41.03%), Postives = 94/156 (60.26%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAE-KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGI----ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + K N+M K+  L+  V  E  + KY ++  E ++ D   M LV+ P  FDV+V  NL+GD++SD+ A L G LG+ PS ++G  +G      AL E VHGSAPDIAGK +ANP A++ S    LR+   L  +AD ++ AI + + +G  RT D+
Sbjct:  191 MEKRNVM-KSGVLWNQVVTETHKAKYSDVQLEHMLADAGGMQLVRQPKQFDVIVTDNLFGDMLSDVAAMLTGSLGMLPSASLGAPDGKTGKRKALYEPVHGSAPDIAGKGIANPIAMIASFAMCLRYSFNLVKEADDLEKAIANVLDKG-IRTGDI 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_STAAR (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain MRSA252) GN=icd PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.634e-20
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = -2
Query:  312 SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 683
            +V +E AEK  +I  ++ + D     ++  PA  DV+   NL GD ISD  A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++++LSSV ML HL   + AD+I ++I  TIA
Sbjct:  266 NVAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIA 390          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_RHIEC (3-isopropylmalate dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=leuB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.199e-20
Identity = 63/156 (40.38%), Postives = 94/156 (60.26%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAE-KYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG--EGGI----ALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL 728
            + K N+M K+  L+  V  E  + KY ++  E ++ D   M LV+ P  FDV+V  NL+GD++SD+ A L G LG+ PS ++G  +G      AL E VHGSAPDIAGK +ANP A++ S    LR+   +  +AD ++ AI + + +G  RT D+
Sbjct:  191 MEKRNVM-KSGVLWNQVVTETHKAKYSDVQLEHMLADAGGMQLVRQPKQFDVIVTDNLFGDMLSDVAAMLTGSLGMLPSASLGAPDGKTGKRKALYEPVHGSAPDIAGKGIANPIAMIASFAMCLRYSFNMVKEADDLEKAIANVLDKG-IRTGDI 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_STAAW (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain MW2) GN=icd PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.057e-19
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = -2
Query:  312 SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 683
            +  +E AEK  +I  ++ + D     ++  PA  DV+   NL GD ISD  A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++++LSSV ML HL   + AD+I ++I  TIA
Sbjct:  266 NAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIA 390          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_STAAS (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain MSSA476) GN=icd PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.057e-19
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = -2
Query:  312 SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 683
            +  +E AEK  +I  ++ + D     ++  PA  DV+   NL GD ISD  A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++++LSSV ML HL   + AD+I ++I  TIA
Sbjct:  266 NAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIA 390          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_STAAN (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain N315) GN=icd PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.057e-19
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = -2
Query:  312 SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 683
            +  +E AEK  +I  ++ + D     ++  PA  DV+   NL GD ISD  A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++++LSSV ML HL   + AD+I ++I  TIA
Sbjct:  266 NAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIA 390          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_STAAM (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=icd PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.057e-19
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = -2
Query:  312 SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA 683
            +  +E AEK  +I  ++ + D     ++  PA  DV+   NL GD ISD  A  +GG+G+ P  NI  E G A+ EA HG+AP  AG N  NP++++LSSV ML HL   + AD+I ++I  TIA
Sbjct:  266 NAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIA 390          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_BRUAB2.130e-2040.543-isopropylmalate dehydrogenase OS=Brucella abortu... [more]
LEU3_BRUA22.130e-2040.543-isopropylmalate dehydrogenase OS=Brucella abortu... [more]
LEU3_RHILO2.783e-2038.463-isopropylmalate dehydrogenase OS=Rhizobium loti ... [more]
LEU3_RHIL33.634e-2041.033-isopropylmalate dehydrogenase OS=Rhizobium legum... [more]
IDH_STAAR3.634e-2043.20Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
LEU3_RHIEC6.199e-2040.383-isopropylmalate dehydrogenase OS=Rhizobium etli ... [more]
IDH_STAAW1.057e-1942.40Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAS1.057e-1942.40Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAN1.057e-1942.40Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAM1.057e-1942.40Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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