CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_SYNY3 (Isocitrate dehydrogenase [NADP] OS=Synechocystis sp. (strain PCC 6803) GN=icd PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 49/145 (33.79%), Postives = 74/145 (51.03%), Query Frame = -2 
Query:  237 EITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIA--EGKYRTADLGGSST-----TSDFTKAICDH 650
            ++   + + D+    +   P  + +L   NL GD +SD  A ++GGLG+ P  NIG+   A+ EA HG+AP  AG +  NP +++LS V ML  +   + AD I+  I + IA  E  Y  A L           S+F +AI  H
Sbjct:  329 KVMVNDRIADSIFQQIQTRPDEYSILATMNLNGDYLSDAAAAVVGGLGMGPGANIGDSA-AIFEATHGTAPKHAGLDRINPGSVILSGVMMLEFMGWQEAADLIKKGIGAAIANREVTYDLARLMEPKVDKPLKCSEFAQAIVSH 472
[Close]
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_ANASP (Isocitrate dehydrogenase [NADP] OS=Anabaena sp. (strain PCC 7120) GN=icd PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 45/142 (31.69%), Postives = 76/142 (53.52%), Query Frame = -2 
Query:  303 KANIMQKTDGLF*SVCREVAE-KYPE-ITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGK 722
            KA I+++ + +  S+       K+ E +   + + D+    +   P  + +L   NL GD +SD  A ++GGLG+ P  NIG+   A+ EA HG+AP  AG +  NP +++LS V ML ++   + AD I+  +   IA  +
Sbjct:  303 KAQIVKEVETVLNSIWESHGNGKWKEKVLVNDRIADSIFQQIQTRPDEYSILATMNLNGDYLSDAAAAIVGGLGMGPGANIGD-SCAVFEATHGTAPKHAGLDRINPGSVILSGVMMLEYMGWQEAADLIKKGLSDAIANSQ 443
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
IDH_SYNY38.670e-1433.79Isocitrate dehydrogenase [NADP] OS=Synechocystis s... [more]
IDH_ANASP8.670e-1431.69Isocitrate dehydrogenase [NADP] OS=Anabaena sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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