CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_LACLA (3-isopropylmalate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=leuB PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 5.405e-32
Identity = 71/162 (43.83%), Postives = 105/162 (64.81%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + K N++  T  L+  +  E+A++YP++  E  ++D+C M+L+ NP  FDV+V  NL+GDI+SD  + L G LG+ PS + G  G+AL E +HGSAPDIAGK +ANP +++LS   MLR      D A  I+ A+  T  +G   T DLGG++TT + T+AI
Sbjct:  181 VDKQNVLA-TSKLWRKMADEIADEYPDVRLEHQLVDSCAMLLITNPQQFDVIVTENLFGDILSDEASSLAGSLGVMPSSSHGFNGLALYEPIHGSAPDIAGKGIANPVSMILSIAMMLRESFGQEDGAAMIEKAVTQTFTDG-ILTKDLGGTATTKEMTEAI 340          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ZYMMO (3-isopropylmalate dehydrogenase OS=Zymomonas mobilis GN=leuB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 74/162 (45.68%), Postives = 104/162 (64.20%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            I K+N+++ T  L+ +V  E+A++YP++    + +DN  M LV+ P  FDV+V  NL+GDI+SDL +  +G +GL PS ++   G  L E +HGSAPDIAG   ANP A +LS   MLR+ L+    ADRI+ A+ ST  E   RTADLGG  TTS+   A+
Sbjct:  185 IDKSNVLE-TSQLWRTVVLEIAQEYPDVELSHMYVDNAAMQLVRAPDQFDVIVTGNLFGDILSDLASACVGSIGLLPSASLNSEGKGLYEPIHGSAPDIAGLGKANPLATILSGAMMLRYSLKREADADRIEKAV-STALEKGARTADLGGKMTTSEMGNAV 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACHD (3-isopropylmalate dehydrogenase OS=Bacillus halodurans GN=leuB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.204e-31
Identity = 71/164 (43.29%), Postives = 107/164 (65.24%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + KAN+++ +  ++  V  EVA+++PE+T E +++DN  M L++ P  FDVLV  NL+GDI+SD  + + G LG+ PS ++   G  L E +HGSAPDIAGK +ANP A + S   ML++   LH++A  I++AI + + +G YRTAD+      S  TKAI D
Sbjct:  189 VDKANVLESSR-MWREVANEVAQEFPEVTLEHMLVDNAAMQLIRRPKQFDVLVTENLFGDILSDEASMVTGSLGMLPSASLTSDGPGLYEPIHGSAPDIAGKGVANPLATIASCAMMLKYSFGLHEEAKTIEDAIEAVLKQG-YRTADIAKPGEESSSTKAITD 350          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_PASMU (3-isopropylmalate dehydrogenase OS=Pasteurella multocida GN=leuB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.573e-31
Identity = 73/153 (47.71%), Postives = 101/153 (66.01%), Query Frame = -2
Query:  273 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 728
            + KAN++  +  L+  V  +VA+ YPE+T + + IDN  M L+K P  FDVL+  N++GDIISD CA + G +G+ PS ++ E G  L E   GSAPDIAGK +ANP A +LS+  MLRH   L+D A  I+NA+ + +AEG +RTADL   S
Sbjct:  192 VDKANVLISSV-LWREVVCDVAKDYPEVTLDHIYIDNATMQLIKQPEFFDVLLCSNIFGDIISDECAMITGSMGMLPSASLNEKGFGLYEPAGGSAPDIAGKGIANPIAQILSAAMMLRHSFNLNDAATAIENAVKNVLAEG-HRTADLADES 342          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_HAEIN (3-isopropylmalate dehydrogenase OS=Haemophilus influenzae GN=leuB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.976e-31
Identity = 71/154 (46.10%), Postives = 102/154 (66.23%), Query Frame = -2
Query:  270 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST 728
            + KAN++Q +  L+     E+A+ YPE+T E + IDN  M L+K+P +FDVL+  N++GDIISD  A + G +G+ PS ++ E G  L E   GSAPDIAGK +ANP A +LS+  MLR+   L++ AD I++A+   +A G +RTADL   ST
Sbjct:  192 VDKANVLQSSI-LWRETVTEMAKDYPEVTLEHIYIDNATMQLIKSPESFDVLLCSNIFGDIISDEAAMITGSMGMLPSASLNEEGFGLYEPAGGSAPDIAGKGIANPIAQILSAAMMLRYSFNLNEAADAIESAVQKVLASG-HRTADLADDST 343          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACHK (3-isopropylmalate dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=leuB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.976e-31
Identity = 73/166 (43.98%), Postives = 107/166 (64.46%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            I KAN+++ +  L+ +V  EVA +YP++  E +++D   M L++NP  FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGKN ANP A++ S   ML +   L  +   I+ AI + +  GK  TAD+GG+ TT+ FTKA+   +
Sbjct:  181 IDKANVLESSK-LWRTVTEEVALRYPDVELEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGMLPSASHAEKGPSLYEPIHGSAPDIAGKNKANPIAMMRSVAMMLGQSFGLTREGCAIEEAISAVLKSGKC-TADIGGAETTTSFTKAVMQEM 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SULSO (3-isopropylmalate dehydrogenase OS=Sulfolobus solfataricus GN=leuB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 74/172 (43.02%), Postives = 106/172 (61.63%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADR-------IQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKAN+M+ TDGLF SVCRE+ +   ++ +EE+ +D     LV++P  FDV+V  N+YGDI+SD  + + G LGL PS NIG+   ++ E VHG+A DIAGK +ANPTA LLS   ML  +    K ++       ++NAI+ T   G   T D+GGS+   D    I  ++
Sbjct:  168 VHKANVMRVTDGLFASVCREILKG--KVNFEEMYVDAAAANLVRDPTRFDVIVTSNVYGDILSDEASQIAGSLGLAPSANIGDRK-SMFEPVHGAAFDIAGKGIANPTAFLLSVSMMLSRMYELSKENKYILASKSLENAIIETYKSGNKLTEDVGGSAKLKDMVDEIYKYM 336          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_HAEI8 (3-isopropylmalate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=leuB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 71/154 (46.10%), Postives = 101/154 (65.58%), Query Frame = -2
Query:  270 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST 728
            + KAN++Q +  L+     E+A+ YPE+T E + IDN  M L+K P +FDVL+  N++GDIISD  A + G +G+ PS ++ E G  L E   GSAPDIAGK +ANP A +LS+  MLR+   L++ AD I++A+   +A G +RTADL   ST
Sbjct:  192 VDKANVLQSSI-LWRETVTEMAKDYPEVTLEHIYIDNATMQLIKAPESFDVLLCSNIFGDIISDEAAMITGSMGMLPSASLNEAGFGLYEPAGGSAPDIAGKGIANPIAQILSAAMMLRYSFNLNEAADAIESAVQKVLASG-HRTADLADDST 343          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: AKSF_METJA (Homoisocitrate dehydrogenase OS=Methanocaldococcus jannaschii GN=aksF PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 7.805e-31
Identity = 74/165 (44.85%), Postives = 104/165 (63.03%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            IHKAN+++ TDGLF  V  E+ + Y  I  ++ ++D+  M L+K+P  FDV+V  N++GDI+SD  + LIGGLGL PS NIG+   AL E VHGSAPDIAGK +ANP A +LS   +  ++   +K D I+ A+   +   K  T DLGG   T D    I +++
Sbjct:  179 IHKANVLRITDGLFLEVFNEIKKHY-NIEADDYLVDSTAMNLIKHPEKFDVIVTTNMFGDILSDEASALIGGLGLAPSANIGDDK-ALFEPVHGSAPDIAGKGIANPMASILSIAMLFDYIGEKEKGDLIREAVKYCLINKKV-TPDLGGDLKTKDVGDEILNYI 340          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACCR (3-isopropylmalate dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=leuB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.331e-30
Identity = 72/166 (43.37%), Postives = 106/166 (63.86%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            I KAN+++ +  L+ +V  EVA +YP +  E +++D   M L++NP  FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGKN ANP A++ S   ML +   L  +   I+ A+ + +  GK  TAD+GG+ TT+ FTKA+   +
Sbjct:  181 IDKANVLESSK-LWRTVTEEVALRYPNVEVEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGMLPSASHAEKGPSLYEPIHGSAPDIAGKNKANPIAMMRSVAMMLGQSFGLTREGYAIEEAVSAVLKSGKC-TADIGGTETTTSFTKAVIQEM 344          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_LACLA5.405e-3243.833-isopropylmalate dehydrogenase OS=Lactococcus lac... [more]
LEU3_ZYMMO1.204e-3145.683-isopropylmalate dehydrogenase OS=Zymomonas mobil... [more]
LEU3_BACHD1.204e-3143.293-isopropylmalate dehydrogenase OS=Bacillus halodu... [more]
LEU3_PASMU1.573e-3147.713-isopropylmalate dehydrogenase OS=Pasteurella mul... [more]
LEU3_HAEIN5.976e-3146.103-isopropylmalate dehydrogenase OS=Haemophilus inf... [more]
LEU3_BACHK5.976e-3143.983-isopropylmalate dehydrogenase OS=Bacillus thurin... [more]
LEU3_SULSO7.805e-3143.023-isopropylmalate dehydrogenase OS=Sulfolobus solf... [more]
LEU3_HAEI87.805e-3146.103-isopropylmalate dehydrogenase OS=Haemophilus inf... [more]
AKSF_METJA7.805e-3144.85Homoisocitrate dehydrogenase OS=Methanocaldococcus... [more]
LEU3_BACCR1.331e-3043.373-isopropylmalate dehydrogenase OS=Bacillus cereus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
back to top