CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACC1 (3-isopropylmalate dehydrogenase OS=Bacillus cereus (strain ATCC 10987) GN=leuB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.331e-30
Identity = 73/166 (43.98%), Postives = 107/166 (64.46%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            I KAN+++ +  L+ +V  EVA +YP++  E +++D   M L++NP  FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGKN ANP A++ S   ML +   L  +   I+ AI + +  GK  TAD+GG+ TT+ FTKA+   +
Sbjct:  181 IDKANVLESSK-LWRTVTEEVALRYPDVELEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGMLPSASHAEKGPSLYEPIHGSAPDIAGKNKANPIAMMRSVAMMLGQSFGLTREGCAIEEAISAVLKLGKC-TADIGGTETTTSFTKAVMQEM 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACAN (3-isopropylmalate dehydrogenase OS=Bacillus anthracis GN=leuB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.331e-30
Identity = 73/166 (43.98%), Postives = 106/166 (63.86%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            I KAN+++ +  L+  V  EVA +YP++  E +++D   M L++NP  FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGKN ANP A++ S   ML +   L  +   I+ AI + +  GK  TAD+GG+ TT+ FTKA+   +
Sbjct:  181 IDKANVLESSK-LWRIVTEEVALRYPDVELEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGMLPSASHAEKGPSLYEPIHGSAPDIAGKNKANPIAMMRSVAMMLGQSFGLTREGCAIEEAISAVLKSGKC-TADIGGTETTTSFTKAVMQEM 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BACCZ (3-isopropylmalate dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=leuB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 72/166 (43.37%), Postives = 106/166 (63.86%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTML-RHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            I KAN+++ +  L+ +V  EVA +YP++  E +++D   M L++NP  FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAGKN ANP A++ S   ML +   L  +   I+ AI + +  GK  T D+GG+ TT+ FTKA+   +
Sbjct:  181 IDKANVLESSK-LWRTVTEEVALRYPDVELEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGMLPSASHAEKGPSLYEPIHGSAPDIAGKNKANPIAMMRSVAMMLGQSFGLTREGCAIEEAISAVLKSGKC-TEDIGGTETTTSFTKAVMQEM 344          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SULTO (3-isopropylmalate dehydrogenase OS=Sulfolobus tokodaii GN=leuB PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 77/172 (44.77%), Postives = 104/172 (60.47%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHL------ELHDKADR-IQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            +HKAN+M+ TDGLF   CR V +   ++ Y E+ +D     LV+NP  FDV+V  N+YGDI+SD  + + G LG+ PS NIG+   AL E VHG+A DIAGKN+ NPTA LLS   M   +      + + KA R ++NAI     E K  T D+GG++TT D    I + L
Sbjct:  168 VHKANVMRITDGLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKK-ALFEPVHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVGGNATTDDLINEIYNKL 336          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ERWCT (3-isopropylmalate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=leuB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 70/153 (45.75%), Postives = 102/153 (66.67%), Query Frame = -2
Query:  273 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 728
            I KAN++Q +  L+  +  EVA+ YP++    + IDN  M L+K+P+ FDV++  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGK++ANP A +LS   +LR+ L   D A+ I+ A+ + +AEG YRTADL  +S
Sbjct:  193 IDKANVLQSSI-LWREIVTEVAKAYPDVKLSHLYIDNATMQLIKDPSQFDVMLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKDIANPIAQILSLALLLRYSLGADDAAEAIEKAVNTALAEG-YRTADLASAS 343          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_LISMO (3-isopropylmalate dehydrogenase OS=Listeria monocytogenes GN=leuB PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 69/162 (42.59%), Postives = 104/162 (64.20%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +  L+  +  EVA ++P+IT E + ID   M++++ P  FDV+V  NL+GDI+SD  + + G LG+ PS +  E G +L E +HGSAPDIA +N+ANP +++ S   MLR    L  +AD I  A   T+  G + TADLGG++TT+DFT  +
Sbjct:  183 VDKANVLASSK-LWRKIAEEVASRHPDITLEHLYIDAAAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYEPIHGSAPDIANQNIANPMSMISSVSMMLRQSFSLFKEADAIDAAATRTMQAG-FLTADLGGNTTTTDFTNEV 342          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_NOVAD (3-isopropylmalate dehydrogenase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=leuB PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.059e-30
Identity = 75/171 (43.86%), Postives = 106/171 (61.99%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE-----GGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + KAN+++ T  L+  V  EVA+ YPE+  E + +DN  M LV+ P  FDV+V  NL+GDI+SD  +  +G +GL  S ++GE     G   L E +HGSAPDIAGK LANP A +LS+  +LRH L L   ADRI+ A+   +A+G     DLGG++ T++   A+   L
Sbjct:  184 VDKANVLE-TSQLWRDVMLEVAKDYPEVALEHMYVDNAAMQLVRAPGNFDVVVTGNLFGDILSDQASMCVGSIGLLASASLGERETEYGTFGLYEPIHGSAPDIAGKGLANPMATILSAAMLLRHSLGLEVAADRIEAAVAKALADG-VLGRDLGGTAGTTEIGDAVLARL 352          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_YERPS (3-isopropylmalate dehydrogenase OS=Yersinia pseudotuberculosis GN=leuB PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.630e-30
Identity = 71/151 (47.02%), Postives = 97/151 (64.24%), Query Frame = -2
Query:  279 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGG 728
            I KAN++Q +  L+  V   +A  YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS + +LR  L   D AD I+ AI   + +G YRTADL G
Sbjct:  193 IDKANVLQSSI-LWREVVNGIAADYPDVALSHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLILLLRFSLGKDDAADAIERAINQALEQG-YRTADLAG 341          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_MANSM (3-isopropylmalate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=leuB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.630e-30
Identity = 69/154 (44.81%), Postives = 101/154 (65.58%), Query Frame = -2
Query:  270 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST 728
            + KAN++Q +  L+     E+A++YPE+  E + IDN  M L+K P +FDVL+  N++GDIISD  A + G +G+ PS ++ E G  L E   GSAPDIAGK +ANP A +LS+  MLR+   L++ A  I+NA+   +A+G +RT DL  +ST
Sbjct:  192 VDKANVLQSSI-LWRETVAEIAKEYPEVQVENMYIDNATMQLIKAPESFDVLLCSNIFGDIISDEAAMITGSMGMLPSASLNEEGFGLYEPAGGSAPDIAGKGIANPIAQILSAAMMLRYSFNLNEAATAIENAVQKVLADG-HRTGDLADNST 343          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_AQUAE (3-isopropylmalate dehydrogenase OS=Aquifex aeolicus GN=leuB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.630e-30
Identity = 73/166 (43.98%), Postives = 103/166 (62.05%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKA-DRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + KAN+++    L+  +  E  E YP++  E + IDNC M LV+ P +FDV+V  N++GDI+SD    ++G LG+ PS +IG+   AL E VHGSAPDIAGK +ANP A +LS+  ML++    DKA D I+ AI  T+ +G YRT D+         TK I D +
Sbjct:  190 VDKANVLE-VSALWRQIVEEEKENYPDVELEHLYIDNCAMQLVRRPTSFDVIVTGNIFGDILSDEAGVVVGSLGMLPSASIGD-RYALYEPVHGSAPDIAGKGIANPIATILSAAMMLKYSFNMDKAHDLIEKAIEETLNQG-YRTPDIYSEGCIKVGTKEITDKI 352          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_BACC11.331e-3043.983-isopropylmalate dehydrogenase OS=Bacillus cereus... [more]
LEU3_BACAN1.331e-3043.983-isopropylmalate dehydrogenase OS=Bacillus anthra... [more]
LEU3_BACCZ2.271e-3043.373-isopropylmalate dehydrogenase OS=Bacillus cereus... [more]
LEU3_SULTO2.966e-3044.773-isopropylmalate dehydrogenase OS=Sulfolobus toko... [more]
LEU3_ERWCT2.966e-3045.753-isopropylmalate dehydrogenase OS=Erwinia carotov... [more]
LEU3_LISMO3.874e-3042.593-isopropylmalate dehydrogenase OS=Listeria monocy... [more]
LEU3_NOVAD5.059e-3043.863-isopropylmalate dehydrogenase OS=Novosphingobium... [more]
LEU3_YERPS8.630e-3047.023-isopropylmalate dehydrogenase OS=Yersinia pseudo... [more]
LEU3_MANSM8.630e-3044.813-isopropylmalate dehydrogenase OS=Mannheimia succ... [more]
LEU3_AQUAE8.630e-3043.983-isopropylmalate dehydrogenase OS=Aquifex aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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