CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_LISMF (3-isopropylmalate dehydrogenase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=leuB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.127e-29
Identity = 67/162 (41.36%), Postives = 105/162 (64.81%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +  L+  +  EVA ++P+IT E + +D   M++++ P  FDV+V  NL+GDI+SD  + + G LG+ PS +  E G +L E +HGSAPDIA +N+ANP +++ S   MLR    L ++AD I  A   T+  G + TADLGG+++T+DFT  +
Sbjct:  183 VDKANVLASSK-LWRKIADEVASRHPDITLEHLYVDAAAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYEPIHGSAPDIANQNIANPMSMISSVSMMLRQSFSLFEEADAIDAATARTMQAG-FLTADLGGNTSTTDFTNEV 342          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_LISIN (3-isopropylmalate dehydrogenase OS=Listeria innocua GN=leuB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.472e-29
Identity = 67/162 (41.36%), Postives = 104/162 (64.20%), Query Frame = -2
Query:  246 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAI 728
            + KAN++  +  L+  +  EVA ++P+IT E + +D   M++++ P  FDV+V  NL+GDI+SD  + + G LG+ PS +  E G +L E +HGSAPDIA +N+ANP +++ S   MLR    L  +AD I  A   T+  G + TADLGG+++T+DFT  +
Sbjct:  183 VDKANVLASSK-LWRKIAEEVASRHPDITLEHLYVDAAAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYEPIHGSAPDIANQNIANPMSMISSVSMMLRQSFSLFKEADAIDAATARTMQAG-FLTADLGGNTSTTDFTNEV 342          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_YERPE (3-isopropylmalate dehydrogenase OS=Yersinia pestis GN=leuB PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 71/151 (47.02%), Postives = 96/151 (63.58%), Query Frame = -2
Query:  279 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGG 728
            I KAN++Q +  L+  V   +A  YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR  L   D AD I+ AI   + +G YRTADL G
Sbjct:  193 IDKANVLQSSI-LWREVVNGIAADYPDVALSHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLTLLLRFSLGKDDAADAIERAINQALEQG-YRTADLAG 341          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_RICFE (Isocitrate dehydrogenase [NADP] OS=Rickettsia felis GN=icd PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 72/155 (46.45%), Postives = 100/155 (64.52%), Query Frame = -2
Query:  264 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTS 728
            + K NIM+ +DG+F  +  E+A++YP+I  E  +ID     L   P  FDV+V  NLYGDIISD+ A + G +GL  S NIG+   A+ EAVHGSAPDIAGK++ANP+ LL +++ ML H+   D A  I+NA   TI +G + TAD+     +S
Sbjct:  173 LSKDNIMKFSDGVFHKIFNEIAKEYPQINNEHYIIDIGTARLATKPEIFDVIVTSNLYGDIISDVAAEISGSVGLAGSANIGQ-HYAMFEAVHGSAPDIAGKDIANPSGLLNAAIMMLVHIGQGDIASLIENAWKKTIEDGVH-TADIYNEQNSS 325          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: DLPA_LEGPH (Protein dlpA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=dlpA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 65/162 (40.12%), Postives = 103/162 (63.58%), Query Frame = -2
Query:  237 KANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDH 722
            K N+++++      +    A++YP+I  + + +D   + L+K+P  F V+V  N++GDI+SD+ AG++GGLGL PS NIG+ G +  E VHGS P I  KN ANP+A+ L+   +L H    D+A +I NA++  I E ++ T DLGG +TT+D   A+ +H
Sbjct:  206 KPNVLRESGEFTRKIFESTAQRYPKIQADILNVDAVALWLIKSPEKFGVIVAENMFGDILSDVGAGVMGGLGLAPSANIGDKG-SYFEPVHGSGPRIR-KNCANPSAMFLTISMLLNHFGYPDRAKKIVNAVMQVIKEKRFITYDLGGHATTTDMANAVIEH 365          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_VIBCH (3-isopropylmalate dehydrogenase OS=Vibrio cholerae GN=leuB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 69/152 (45.39%), Postives = 101/152 (66.45%), Query Frame = -2
Query:  276 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADR-IQNAILSTIAEGKYRTADLGGS 728
            I KAN++Q +  L+  V  E+A++YP+++   + IDN  M L+K+PA FDV++  N++GDI+SD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  MLR+    + A R I+NA+   +A G+  TADL GS
Sbjct:  194 IDKANVLQSSI-LWREVVSEIAKEYPDVSLSHMYIDNATMQLIKDPAQFDVMLCSNIFGDILSDECAMITGSMGMLPSASMNESKFGLYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLGEEAAARDIENAVSQALAAGEL-TADLAGS 343          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STRR6 (3-isopropylmalate dehydrogenase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=leuB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 69/166 (41.57%), Postives = 108/166 (65.06%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLR-HLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            I K N++  T  L+  V  EVA+ +P++T E  ++D+  M+++ NPA FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAG+ +ANP +++LS V MLR     ++  +RI+ A+ +++A G   T D+GG ++T +  +AI   L
Sbjct:  182 IDKQNVLA-TSKLWRKVAEEVAQDFPDVTLEHQLVDSAAMLMITNPAKFDVIVTENLFGDILSDESSVLSGTLGVMPSASHSENGPSLYEPIHGSAPDIAGQGIANPISMILSVVMMLRDSFGRYEDTERIKRAVETSLAAG-ILTRDIGGQASTKEMMEAIIARL 345          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STAAC (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain COL) GN=leuB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 71/166 (42.77%), Postives = 100/166 (60.24%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + K N++  +  L+  V  EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I S I  G+  TADLGG   T+D  + +   L
Sbjct:  183 VDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYSMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STAA3 (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=leuB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 71/166 (42.77%), Postives = 100/166 (60.24%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + K N++  +  L+  V  EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I S I  G+  TADLGG   T+D  + +   L
Sbjct:  183 VDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYSMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUO (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Uroleucon obscurum GN=leuB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 66/153 (43.14%), Postives = 102/153 (66.67%), Query Frame = -2
Query:  273 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS 728
            I K+N++  +  L+  + ++V++ YP++    + IDN  M ++KNP  FDVL+ PNL+GDIISD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS   ++R+ + L D AD+I  ++LS + +G YRTAD+  ++
Sbjct:  194 IDKSNVLNSSI-LWKEIVQKVSKNYPDVDLSHLYIDNAIMQIIKNPNQFDVLLCPNLFGDIISDECAIITGSIGMLPSASLNEKKFGLYEPAGGSAPDIAGKNIANPIAQILSLSMLVRYGMNLKDIADKIDKSVLSVLKKG-YRTADISNNN 344          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_LISMF1.127e-2941.363-isopropylmalate dehydrogenase OS=Listeria monocy... [more]
LEU3_LISIN1.472e-2941.363-isopropylmalate dehydrogenase OS=Listeria innocu... [more]
LEU3_YERPE1.922e-2947.023-isopropylmalate dehydrogenase OS=Yersinia pestis... [more]
IDH_RICFE1.922e-2946.45Isocitrate dehydrogenase [NADP] OS=Rickettsia feli... [more]
DLPA_LEGPH1.922e-2940.12Protein dlpA OS=Legionella pneumophila subsp. pneu... [more]
LEU3_VIBCH2.511e-2945.393-isopropylmalate dehydrogenase OS=Vibrio cholerae... [more]
LEU3_STRR62.511e-2941.573-isopropylmalate dehydrogenase OS=Streptococcus p... [more]
LEU3_STAAC2.511e-2942.773-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAA32.511e-2942.773-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_BUCUO2.511e-2943.143-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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