CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_RICBR (Isocitrate dehydrogenase [NADP] OS=Rickettsia bellii (strain RML369-C) GN=icd PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.511e-29
Identity = 72/148 (48.65%), Postives = 98/148 (66.22%), Query Frame = -2
Query:  285 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADL 728
            + K NIM+ +DG+F  V  E+A++YP+I  E  +ID     L   P  FDV+V  NLYGDIISD+ A + G +GL  S NIGE   A+ EAVHGSAPDIAG+++ANP+ LL +++ ML H+   D A  I+NA   TI +G + TAD+
Sbjct:  173 LSKDNIMKFSDGIFHKVFNEIAKEYPQINNEHYIIDIGTARLATKPEIFDVIVTSNLYGDIISDVAAEISGSVGLAGSANIGE-HYAMFEAVHGSAPDIAGQDIANPSGLLNAAIMMLVHIGQGDIATLIENAWKKTIEDGMH-TADI 318          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_VIBF1 (3-isopropylmalate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=leuB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29
Identity = 72/169 (42.60%), Postives = 105/169 (62.13%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSS---TTSDFTKAICDHL 728
            I KAN++Q +  L+  V  EVA+ YP++T   + IDN  M L+K+P+ FDV++  N++GDIISD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  MLR+ L   + A  I+ A+   ++ G+  TADL G     TTS     I +++
Sbjct:  194 IDKANVLQSSI-LWREVVEEVAKGYPDVTLNHMYIDNATMQLIKDPSQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESNFGLYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLGEEEAAQSIEAAVSKALSAGEL-TADLAGDKPALTTSAMGDKIAEYI 360          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STAA8 (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325) GN=leuB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29
Identity = 71/166 (42.77%), Postives = 99/166 (59.64%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + K N++  +  L+  V  EV++ YPE+T   + +D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I S I  G+  TADLGG   T+D  + +   L
Sbjct:  183 VDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLFVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYSMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STAAW (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=leuB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + K N++  +  L+  V  EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  183 VDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STAAS (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=leuB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + K N++  +  L+  V  EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  183 VDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STAAR (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=leuB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + K N++  +  L+  V  EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  183 VDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVYENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STAAN (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=leuB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + K N++  +  L+  V  EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  183 VDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STAAM (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=leuB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + K N++  +  L+  V  EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  183 VDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STAAB (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            + K N++  +  L+  V  EV++ YPE+T   +++D C M L+ NP  FDV+V  NL+GDI+SD  + + G LGL+PS +    G  L E +HGSAPDIAGKN+ANP  ++LS    LR  L   D AD ++  I + I  G+  TADLGG   T+D  + +   L
Sbjct:  183 VDKENVLASSK-LWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIENGQ-TTADLGGKLNTTDIFEILSQKL 346          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ECO57 (3-isopropylmalate dehydrogenase OS=Escherichia coli O157:H7 GN=leuB PE=3 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 71/159 (44.65%), Postives = 102/159 (64.15%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  E+A +YP+I    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  193 IDKANVLQSSI-LWREIVNEIATEYPDIELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAASAIERAINRALEEG-IRTGDLARGAAAVSTD 349          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
IDH_RICBR2.511e-2948.65Isocitrate dehydrogenase [NADP] OS=Rickettsia bell... [more]
LEU3_VIBF14.283e-2942.603-isopropylmalate dehydrogenase OS=Vibrio fischeri... [more]
LEU3_STAA84.283e-2942.773-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAW5.594e-2942.173-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAS5.594e-2942.173-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAR5.594e-2942.173-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAN5.594e-2942.173-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAM5.594e-2942.173-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAB5.594e-2942.173-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_ECO575.594e-2944.653-isopropylmalate dehydrogenase OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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