CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SODGM (3-isopropylmalate dehydrogenase OS=Sodalis glossinidius (strain morsitans) GN=leuB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.305e-29
Identity = 68/154 (44.16%), Postives = 100/154 (64.94%), Query Frame = -2
Query:  270 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSST 728
            I KAN++Q +  L+  V  +VA  YP++    + IDN  M L+K+P+ FDV++  NL+GDI+SD CA + G +G+ PS ++ E G  + E   GSAPDIAGK++ANP A +LS+  +LR+ L L D AD I+ A+   +  G +RTADL G  +
Sbjct:  194 IDKANVLQSSI-LWRKVVSQVAPDYPDVALSHLYIDNATMQLIKDPSQFDVMLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGMYEPAGGSAPDIAGKDIANPVAQILSASLLLRYSLGLDDAADAIELAVNQALEAG-HRTADLAGGGS 345          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SHIFL (3-isopropylmalate dehydrogenase OS=Shigella flexneri GN=leuB PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 7.305e-29
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  193 IDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAASAIERAINRALEEG-IRTGDLARGAAAVSTD 349          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ECOUT (3-isopropylmalate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=leuB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.305e-29
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  194 IDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAASAIERAINRALEEG-IRTGDLARGAAAVSTD 350          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ECOL6 (3-isopropylmalate dehydrogenase OS=Escherichia coli O6 GN=leuB PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 7.305e-29
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  193 IDKANVLQSSI-LWREIVNEIATEYPDVELTHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAASAIERAINRALEEG-IRTGDLARGAAAVSTD 349          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVY (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=leuB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 69/151 (45.70%), Postives = 97/151 (64.24%), Query Frame = -2
Query:  279 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGG 728
            I KAN++Q +  L+  V  E+A+ YP++    + IDN  M L+K+PA FDV++  N++GDIISD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  MLR+ L     A  I+NA+   +A G+  TADL G
Sbjct:  194 IDKANVLQSSI-LWREVVEEIAKDYPDVELSHMYIDNATMQLIKDPAQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESKFGLYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLGEEAAAQDIENAVSQALAAGEL-TADLAG 342          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STRT2 (3-isopropylmalate dehydrogenase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=leuB PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 70/166 (42.17%), Postives = 108/166 (65.06%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            I K N++  T  L+  V  EV+ ++P++T E  ++D+  M+++ NPA FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAG+ +ANP +++LS   MLR      + A+ I+NA+  T+ +G   T DLGG ++T++ T AI  +L
Sbjct:  182 IDKQNVLA-TSKLWRKVADEVSLEFPDVTLEHQLVDSAAMIMITNPARFDVVVTENLFGDILSDESSVLPGTLGVMPSASHSENGPSLYEPIHGSAPDIAGQGIANPISMILSVAMMLRESFNETEGAELIENAVDKTLNQG-ILTRDLGGQASTAEMTAAIISNL 345          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_STRT1 (3-isopropylmalate dehydrogenase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=leuB PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 70/166 (42.17%), Postives = 108/166 (65.06%), Query Frame = -2
Query:  234 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 728
            I K N++  T  L+  V  EV+ ++P++T E  ++D+  M+++ NPA FDV+V  NL+GDI+SD  + L G LG+ PS +  E G +L E +HGSAPDIAG+ +ANP +++LS   MLR      + A+ I+NA+  T+ +G   T DLGG ++T++ T AI  +L
Sbjct:  182 IDKQNVLA-TSKLWRKVADEVSLEFPDVTLEHQLVDSAAMIMITNPARFDVVVTENLFGDILSDESSVLPGTLGVMPSASHSENGPSLYEPIHGSAPDIAGQGIANPISMILSVAMMLRESFNETEGAELIENAVDKTLNQG-ILTRDLGGQASTAEMTAAIISNL 345          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SHIDS (3-isopropylmalate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=leuB PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  193 IDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAASAIERAINRALEEG-IRTRDLARGAAAVSTD 349          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SALTY (3-isopropylmalate dehydrogenase OS=Salmonella typhimurium GN=leuB PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 70/159 (44.03%), Postives = 103/159 (64.78%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  +VA+ YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+ +D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  193 IDKANVLQSSI-LWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEG-VRTGDLARGAAAVSTD 349          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SALPA (3-isopropylmalate dehydrogenase OS=Salmonella paratyphi A GN=leuB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 70/159 (44.03%), Postives = 103/159 (64.78%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  +VA+ YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+ +D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  193 IDKANVLQSSI-LWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEG-VRTGDLARGAAAVSTD 349          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_SODGM7.305e-2944.163-isopropylmalate dehydrogenase OS=Sodalis glossin... [more]
LEU3_SHIFL7.305e-2944.033-isopropylmalate dehydrogenase OS=Shigella flexne... [more]
LEU3_ECOUT7.305e-2944.033-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_ECOL67.305e-2944.033-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_VIBVY9.541e-2945.703-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]
LEU3_STRT29.541e-2942.173-isopropylmalate dehydrogenase OS=Streptococcus t... [more]
LEU3_STRT19.541e-2942.173-isopropylmalate dehydrogenase OS=Streptococcus t... [more]
LEU3_SHIDS9.541e-2944.033-isopropylmalate dehydrogenase OS=Shigella dysent... [more]
LEU3_SALTY9.541e-2944.033-isopropylmalate dehydrogenase OS=Salmonella typh... [more]
LEU3_SALPA9.541e-2944.033-isopropylmalate dehydrogenase OS=Salmonella para... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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