CX296791

Overview
NameCX296791
Unique NameCX296791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12471 contig Ccv1_Contig12471:803..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SALCH (3-isopropylmalate dehydrogenase OS=Salmonella choleraesuis GN=leuB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 70/159 (44.03%), Postives = 103/159 (64.78%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  +VA+ YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+ +D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  193 IDKANVLQSSI-LWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEG-VRTGDLARGAAAVSTD 349          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_RICTY (Isocitrate dehydrogenase [NADP] OS=Rickettsia typhi GN=icd PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 73/162 (45.06%), Postives = 102/162 (62.96%), Query Frame = -2
Query:  243 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 728
            + K NIM+ +DG+F  V  E+A++YP+I  E  +ID     L   P  FD++V  NLYGDIISD+ A + G +GL  S NIG+   A+ EAVHGSAPDIAGK +ANP+ LL +++ ML H+   D A  I+NA   TI +G + T D+    ++S   K +C
Sbjct:  173 LSKDNIMKFSDGIFHRVFNEIAKEYPQIDNEHYIIDIGTAKLATTPEIFDIIVTSNLYGDIISDVAAEISGSVGLAGSANIGQ-HYAMFEAVHGSAPDIAGKGIANPSGLLNAAIMMLVHIGQGDIASLIENAWKKTIEDGVH-TFDIYSEHSSS---KKVC 329          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: IDH_RICPR (Isocitrate dehydrogenase [NADP] OS=Rickettsia prowazekii GN=icd PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 73/160 (45.62%), Postives = 101/160 (63.12%), Query Frame = -2
Query:  243 KANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAIC 722
            K NIM+ +DG+F  V  E+A++YP+I  E  +ID     L   P  FD++V  NLYGDIISD+ A + G +GL  S NIG+   A+ EAVHGSAPDIAGK +ANP+ LL +++ ML H+   D A  I+NA   TI +G + T D+    ++S   K +C
Sbjct:  175 KDNIMKFSDGIFHRVFNEIAKEYPQINNEHYIIDIGTAKLATKPEIFDIIVTSNLYGDIISDVAAEISGSVGLAGSANIGQ-HYAMFEAVHGSAPDIAGKGIANPSGLLNAAIMMLVHIGQGDIASLIENAWKKTIEDGVH-TFDIYNEHSSS---KKVC 329          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_PHOLL (3-isopropylmalate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=leuB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 66/152 (43.42%), Postives = 100/152 (65.79%), Query Frame = -2
Query:  276 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGS 728
            I KAN++Q +  L+  V  E+A+ YP++    + IDN  M L+K+P+ FDV++  N++GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGK +ANP A +LS+  +LR+ L  +D A+ I+ A+   + +G YRT DL G+
Sbjct:  193 IDKANVLQSSV-LWREVVTEIAKAYPDVEINHMYIDNATMQLIKDPSQFDVMLCSNIFGDILSDECAMITGSMGMLPSASLNEKGFGLYEPAGGSAPDIAGKGIANPIAQILSAALLLRYSLGHNDAANAIEQAVNYALEQG-YRTTDLAGN 342          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_BORA1 (3-isopropylmalate dehydrogenase OS=Bordetella avium (strain 197N) GN=leuB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 69/164 (42.07%), Postives = 102/164 (62.20%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            + KAN+++ T   +  +  EVA +YP++    + +DN  M LV+NP  FDV+V  NL+GDI+SD  A L G +G+ PS ++   G  L E  HGSAPDIAG+ +ANP A +LS+  +LR+ L    +ADRI+ A+   +A+G  RTAD+  + TT   T  + D
Sbjct:  190 VDKANVLE-TSQFWRDIVIEVAREYPDVELSHMYVDNAAMQLVRNPRQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLNASGQGLYEPSHGSAPDIAGQGIANPLATILSAAMLLRYSLNQPAQADRIEAAVRKVLAQG-LRTADIHEAGTTKVSTSQMGD 351          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVU (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus GN=leuB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 69/151 (45.70%), Postives = 97/151 (64.24%), Query Frame = -2
Query:  279 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGG 728
            I KAN++Q +  L+  V  E+A+ YP++    + IDN  M L+K+PA FDV++  N++GDIISD CA + G +G+ PS ++ E    L E   GSAPDIAGKN+ANP A +LS+  MLR+ L     A  I+NA+   +A G+  TADL G
Sbjct:  194 IDKANVLQSSI-LWREVVEELAKDYPDVELSHMYIDNATMQLIKDPAQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNESKFGLYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLGEEAAAQDIENAVSQALAAGEL-TADLAG 342          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_SHISS (3-isopropylmalate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=leuB PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  193 IDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEG-IRTGDLARGAAAVSTD 349          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_PHOPR (3-isopropylmalate dehydrogenase OS=Photobacterium profundum GN=leuB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 67/150 (44.67%), Postives = 94/150 (62.67%), Query Frame = -2
Query:  279 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGG 728
            I KAN++Q +  L+  V  EVA+ YPE+T   + IDN  M L+K+P+ FDV++  N++GDIISD CA + G +G+ PS ++ +    + E   GSAPDIAGKN+ANP A +LS+  MLR+    +KA R     +S   E    TADL G
Sbjct:  193 IDKANVLQSSI-LWREVVEEVAKDYPEVTLNHMYIDNATMQLIKDPSQFDVMLCSNIFGDIISDECAMITGSMGMLPSASLNQEKFGMYEPAGGSAPDIAGKNIANPVAQILSAALMLRYSLDEEKAARAIEQAVSQALEAGELTADLAG 341          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_METCA (3-isopropylmalate dehydrogenase OS=Methylococcus capsulatus GN=leuB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 67/164 (40.85%), Postives = 102/164 (62.20%), Query Frame = -2
Query:  240 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICD 728
            I KAN+++ T+ L+  V  EV + YP++    + +DN  M LV+NP  FDV++  N++GDI+SD  A L G +G+ PS ++ E G  + E +HGSAPDIAG+ +ANP A +LS   MLR+  +    A+RI  A+ + + +G +RTAD+    T    T A+ D
Sbjct:  190 IDKANVLECTE-LWREVVIEVGKDYPDVALSHMYVDNAAMQLVRNPKQFDVMLTDNMFGDILSDCAAMLTGSIGMLPSASLAESGKGMYEPIHGSAPDIAGRGIANPIATILSLAMMLRYSFDDAVSAERIGKAVQTALDQG-FRTADIASEGTVEVGTAAMGD 351          
BLAST of CX296791 vs. ExPASy Swiss-Prot
Match: LEU3_ECOLI (3-isopropylmalate dehydrogenase OS=Escherichia coli (strain K12) GN=leuB PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = -2
Query:  261 IHKANIMQKTDGLF*SVCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDIAGKNLANPTALLLSSVTMLRH-LELHDKADRIQNAILSTIAEGKYRTADL--GGSSTTSD 728
            I KAN++Q +  L+  +  E+A +YP++    + IDN  M L+K+P+ FDVL+  NL+GDI+SD CA + G +G+ PS ++ E G  L E   GSAPDIAGKN+ANP A +LS   +LR+ L+  D A  I+ AI   + EG  RT DL  G ++ ++D
Sbjct:  193 IDKANVLQSSI-LWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEG-IRTGDLARGAAAVSTD 349          
The following BLAST results are available for this feature:
BLAST of CX296791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
LEU3_SALCH9.541e-2944.033-isopropylmalate dehydrogenase OS=Salmonella chol... [more]
IDH_RICTY9.541e-2945.06Isocitrate dehydrogenase [NADP] OS=Rickettsia typh... [more]
IDH_RICPR9.541e-2945.63Isocitrate dehydrogenase [NADP] OS=Rickettsia prow... [more]
LEU3_PHOLL1.246e-2843.423-isopropylmalate dehydrogenase OS=Photorhabdus lu... [more]
LEU3_BORA11.246e-2842.073-isopropylmalate dehydrogenase OS=Bordetella aviu... [more]
LEU3_VIBVU1.627e-2845.703-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]
LEU3_SHISS1.627e-2844.033-isopropylmalate dehydrogenase OS=Shigella sonnei... [more]
LEU3_PHOPR1.627e-2844.673-isopropylmalate dehydrogenase OS=Photobacterium ... [more]
LEU3_METCA1.627e-2840.853-isopropylmalate dehydrogenase OS=Methylococcus c... [more]
LEU3_ECOLI1.627e-2844.033-isopropylmalate dehydrogenase OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC05802H03SK FerrChloL1 Citrus clementina cDNA clone C05802H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296791 ID=CX296791; Name=CX296791; organism=Citrus clementina; type=EST; length=729bp
TAAATATTGCCGTATAAATACCTTTTCTGAGGACGGCCATATACACTCTG
GCTGAACAGTTTCATCAGAAAAAAACTTCTACATAGTCACCAAGGTGATG
GGTCTCATTCCCCTCAAAGAAAAACACTTTAAAAAGGGGGGGAAAAAACA
AATTTGAGACATTGCTCAAAAAAAGAAAGGTAGAATGTAAATCTTGAACA
TGAATTCAAATTCTATGTAGAAAGAAATATTTAAAGATGATCGCAGATTG
CCTTTGTGAAATCTGATGTCGTTGAAGAGCCACCAAGATCTGCAGTTCGA
TACTTCCCCTCTGCAATTGTGCTCAGGATAGCATTTTGGATCCTATCAGC
CTTGTCATGGAGCTCCAAATGGCGCAACATTGTTACCGAACTCAACAGCA
AAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCTGAACCA
TGAACAGCTTCAGCAAGGGCAATTCCTCCTTCCCCAATATTGCAACTAGG
TGTTAAGCCCAATCCACCAATCAACCCAGCACATAGGTCACTAATGATGT
CACCATAGAGGTTAGGCATTACCAACACATCGAAAGCCGCTGGATTCTTC
ACAAGCATCATGCAGCAATTGTCGATAACAACTTCCTCATATGTTATCTC
AGGGTACTTCTCGGCAACCTCACGACAAACACTTCAAAAAAGCCCATCAG
TTTTCTGCATAATATTTGCTTTGTGTATT
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