CX296795 | Citrus Genome Database

Overview


Name	CX296795
Unique Name	CX296795
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	296

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.623e-21
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.623e-21
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.623e-21
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.231e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.731e-21
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 93.5893 bits (231), Expect = 3.391e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.4337 bits (228), Expect = 7.553e-19
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 91.2781 bits (225), Expect = 1.683e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

[Close]

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

The following BLAST results are available for this feature:

BLAST of CX296795 vs. ExPASy Swiss-Prot

BLAST of CX296795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87


Match Name	E-value	Identity	Description
UBIQ_AVEFA	3.623e-21	96.00	Ubiquitin OS=Avena fatua PE=3 SV=1	[more]
UBIQ_ASPOF	3.623e-21	96.00	Ubiquitin OS=Asparagus officinalis PE=3 SV=1	[more]
UBIQ_ARATH	3.623e-21	96.00	Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=...	[more]
UBL1_ORYSJ	4.731e-21	96.00	Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja...	[more]
UBIQ_XENLA	8.070e-21	94.00	Ubiquitin OS=Xenopus laevis PE=1 SV=1	[more]
UBIQ_TETPY	8.070e-21	94.00	Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ...	[more]
UBIQ_STRPU	8.070e-21	94.00	Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV...	[more]
UBIQ_SPOFR	8.070e-21	94.00	Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1	[more]
UBIQ_RAT	8.070e-21	94.00	Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1	[more]
UBIQ_RABIT	8.070e-21	94.00	Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C05802H07SK FerrChloL1 Citrus clementina cDNA clone C05802H07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296795 ID=CX296795; Name=CX296795; organism=Citrus clementina; type=EST; length=296bp
GAGGCCAAGCTCCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGCGTCT
GATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACA
ATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGC
ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGT
TGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGG
AAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCA