CX296795 | Citrus Genome Database

Overview


Name	CX296795
Unique Name	CX296795
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	296

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.070e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

The following BLAST results are available for this feature:

BLAST of CX296795 vs. ExPASy Swiss-Prot

BLAST of CX296795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87


Match Name	E-value	Identity	Description
UBIQ_PONPY	8.070e-21	94.00	Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2	[more]
UBIQ_PLUXY	8.070e-21	94.00	Ubiquitin OS=Plutella xylostella PE=3 SV=1	[more]
UBIQ_PIG	8.070e-21	94.00	Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1	[more]
UBIQ_PANTR	8.070e-21	94.00	Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2	[more]
UBIQ_OPHHA	8.070e-21	94.00	Ubiquitin OS=Ophiophagus hannah PE=3 SV=1	[more]
UBIQ_MOUSE	8.070e-21	94.00	Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1	[more]
UBIQ_MANSE	8.070e-21	94.00	Ubiquitin OS=Manduca sexta PE=3 SV=1	[more]
UBIQ_MACFA	8.070e-21	94.00	Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=...	[more]
UBIQ_ICTPU	8.070e-21	94.00	Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV...	[more]
UBIQ_HUMAN	8.070e-21	94.00	Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C05802H07SK FerrChloL1 Citrus clementina cDNA clone C05802H07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296795 ID=CX296795; Name=CX296795; organism=Citrus clementina; type=EST; length=296bp
GAGGCCAAGCTCCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGCGTCT
GATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACA
ATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGC
ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGT
TGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGG
AAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCA