CX296795 | Citrus Genome Database

Overview


Name	CX296795
Unique Name	CX296795
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	296

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1

Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            K+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.783e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++K+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.1301 bits (235), Expect = 1.165e-19
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++K+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.1301 bits (235), Expect = 1.165e-19
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++K+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.1301 bits (235), Expect = 1.165e-19
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++K+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.1301 bits (235), Expect = 1.165e-19
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++K+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.1301 bits (235), Expect = 1.165e-19
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.348e-20
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 90.8929 bits (224), Expect = 2.198e-18
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.348e-20
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 1

Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            + K+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 4.428e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.067e-20
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 1

Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            K+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 89.7373 bits (221), Expect = 4.896e-18
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1

Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGK 48

The following BLAST results are available for this feature:

BLAST of CX296795 vs. ExPASy Swiss-Prot

BLAST of CX296795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87


Match Name	E-value	Identity	Description
UBIQ_SHEEP	1.377e-20	92.00	Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2	[more]
UBIQ_ACACA	1.377e-20	97.92	Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1	[more]
UBIQ_YEAST	1.798e-20	92.00	Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1...	[more]
UBIQ_SCHPO	1.798e-20	92.00	Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=...	[more]
UBIQ_KLULA	1.798e-20	92.00	Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=...	[more]
UBIQ_CRYNE	1.798e-20	92.00	Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ...	[more]
UBIQ_CANAL	1.798e-20	92.00	Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1	[more]
UBIQ_LEIMA	2.348e-20	92.00	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_AGLNE	2.348e-20	92.00	Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1	[more]
UBIQ_PHYIN	3.067e-20	95.83	Ubiquitin OS=Phytophthora infestans PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C05802H07SK FerrChloL1 Citrus clementina cDNA clone C05802H07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296795 ID=CX296795; Name=CX296795; organism=Citrus clementina; type=EST; length=296bp
GAGGCCAAGCTCCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGCGTCT
GATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACA
ATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGC
ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGT
TGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGG
AAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCA