CX296795

Overview
NameCX296795
Unique NameCX296795
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length296
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.067e-20
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            K+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   29 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 94.3597 bits (233), Expect = 1.988e-19
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1
Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGK 48          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.522e-19
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            +AK+QDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   27 KAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          

HSP 2 Score: 85.8853 bits (211), Expect = 7.070e-17
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1
Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA K
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADK 48          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.988e-19
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 1
Query:    1 EAKLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 144
            +AK+QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:   16 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          

HSP 2 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1
Query:  184 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 37          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.173e-17
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            K+ DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   29 KIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          

HSP 2 Score: 73.1738 bits (178), Expect = 4.742e-13
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1
Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGK
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGK 48          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.413e-17
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            K+ DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   29 KIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          

HSP 2 Score: 75.485 bits (184), Expect = 9.555e-14
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 1
Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGK
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGK 48          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.014e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 159
            ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:   29 RVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.943e-12
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:   29 KVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          

HSP 2 Score: 66.2402 bits (160), Expect = 5.797e-11
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1
Query:  151 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGK
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGK 48          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          

HSP 2 Score: 65.4698 bits (158), Expect = 9.888e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  157 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          

HSP 2 Score: 65.4698 bits (158), Expect = 9.888e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  157 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          

HSP 2 Score: 65.855 bits (159), Expect = 7.571e-11
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  157 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGK 48          
The following BLAST results are available for this feature:
BLAST of CX296795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
UBIQ_NEUCR3.067e-2095.83Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_LEITA1.522e-1990.00Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE1.988e-1993.75Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIL_NPVAC3.173e-1783.33Ubiquitin-like protein OS=Autographa californica n... [more]
UBIL_NPVOP5.413e-1783.33Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
NEDD8_DROME4.014e-1262.75NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
NEDD8_CAEEL8.943e-1266.67NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RUB2_ORYSJ1.168e-1166.67NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ1.168e-1166.67NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_DESAN1.168e-1166.67NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]

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Properties
Property NameValue
Genbank descriptionC05802H07SK FerrChloL1 Citrus clementina cDNA clone C05802H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296795 ID=CX296795; Name=CX296795; organism=Citrus clementina; type=EST; length=296bp
GAGGCCAAGCTCCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGCGTCT
GATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACA
ATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGC
ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGT
TGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGG
AAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCA
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