CX296795

Overview
NameCX296795
Unique NameCX296795
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length296
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          

HSP 2 Score: 65.4698 bits (158), Expect = 9.888e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  157 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.797e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153
            ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:   29 RVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77          

HSP 2 Score: 65.4698 bits (158), Expect = 9.888e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  157 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 294
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGK
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGK 48          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.571e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.571e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.571e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.571e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CX296795 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.571e-11
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    7 KLQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 150
            ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   29 RVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CX296795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
RUB1_ARATH1.168e-1166.67NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RUB2_ARATH5.797e-1163.27NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_RAT7.571e-1162.50NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT7.571e-1162.50NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE7.571e-1162.50NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN7.571e-1162.50NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN7.571e-1162.50NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05802H07SK FerrChloL1 Citrus clementina cDNA clone C05802H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296795 ID=CX296795; Name=CX296795; organism=Citrus clementina; type=EST; length=296bp
GAGGCCAAGCTCCAAGACAAGGAAGGAATCCCTCCGGACCAGCAGCGTCT
GATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTACA
ATATCCAAAAGGAATCGACGCTTCATCTGGTGCTTCGTCTCCGTGGAGGC
ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGT
TGAGAGCTCCGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGG
AAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCA
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