CX296804

Overview
NameCX296804
Unique NameCX296804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.641e-19
Identity = 43/90 (47.78%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            +  +PLD DL+R+LA EHE+ IT+EEG++GGFG+HV  FL    +L+  LK+R++ LPD Y++HGSP   L   GL ++ I   V + LG
Sbjct:  540 RFAKPLDKDLMRRLAREHEVFITIEEGAIGGFGAHVLQFLAQEALLEHGLKVRTLRLPDEYLNHGSPEKILSRVGLDAKGIINAVFTSLG 629          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.061e-19
Identity = 46/91 (50.55%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 273
            +  +PLD DLIRQLA+ HE+LIT+EEGSVGGFGS V  FL   G+LD  LK+R++V+PD +++   P      +GL    I  TV   LGR
Sbjct:  540 RFAKPLDHDLIRQLASHHEVLITIEEGSVGGFGSQVMQFLASEGLLDNGLKIRTLVMPDIWVEQAKPEVMNAMAGLDRAGIVQTVFKALGR 630          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.916e-19
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 267
            +  +P+D +LI  LA  H  L+ VEEGSVGGFGS V  FL+  G++DG LK+R++ LPD YIDH +PA QL E+GL +  I    L+L+
Sbjct:  539 RFAKPIDRELIAHLARTHAALVVVEEGSVGGFGSQVLQFLSDEGLMDGGLKVRALTLPDTYIDHDTPAAQLAEAGLDADGIYKRALALV 627          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS1_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.916e-19
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   10 QPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 273
            +PLDT LI QL   H  L+TVE+G++GGFG+HV H+L  SG  DG L LR M LPDR+I+  SP D   ++GL +  I+AT    L R
Sbjct:  546 RPLDTGLIDQLVRHHAALVTVEQGAMGGFGAHVMHYLANSGGFDGGLALRVMTLPDRFIEQASPEDMYADAGLRAEDIAATARGALAR 633          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_RHILO (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium loti GN=dxs PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.034e-18
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 285
            +  +PLD DLIR+LA  HE+L+TVEEG++GGF SHV  FL   G+L+  LK+R +VLPD + DH  P     ++GL +  I  TV + L     A
Sbjct:  540 RFAKPLDEDLIRRLARSHEVLVTVEEGAIGGFASHVLQFLAHEGLLESGLKVRPLVLPDVFTDHAKPEKMYADAGLDAAGIVRTVFTALDHTARA 634          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.034e-18
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 267
            +  +PLD  LIRQL   H++++TVEEGS+GG G+HV    +  G++DG LK+R+M LPD + DH +P  Q +E+GL++ HI  TVL  L
Sbjct:  540 RFAKPLDVALIRQLMTTHDVIVTVEEGSIGGLGAHVLTMASDEGLVDGGLKIRTMRLPDLFQDHDAPEKQYDEAGLNAPHIVDTVLKAL 628          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD-GPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 273
            + ++PLD DL+ +LA +H++LIT+EEGS+GGFGSHV   L   G LD G +++R+MVLPD ++DH +P       GL  R I A V   LG+
Sbjct:  567 RFMKPLDVDLVLKLARDHDVLITIEEGSIGGFGSHVMQTLAEHGALDSGQVRVRAMVLPDEFLDHDTPNAMYASVGLDDRGIVAKVFEALGK 658          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            +  +PLD ++I  L   HE LITVEEG++GGFGSHV   L+  G+ D   K RSMVLPD +ID  SPAD    +G+++  I   VLS+LG
Sbjct:  544 RFAKPLDREMILDLVANHEALITVEEGAIGGFGSHVAQLLSDEGVFDTGFKYRSMVLPDIFIDQSSPADMYAVAGMNAADIETKVLSVLG 633          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 267
            + L+P D +L+  LA  HE+LI VEEG++GGFG+HV  +LT  G+LDG LKLR++ +PDR+ +H +P  Q  ++G+ ++ I+  VL  L
Sbjct:  542 RFLKPFDEELVADLAARHEVLIVVEEGAIGGFGAHVATWLTNQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.008e-18
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 273
            +  +PLD DLIRQ A  HE++ITVEEGSVGGFGS V  +L+  G+LD  LK+RS+V+PD +++   P      +GL    I +TV   LGR
Sbjct:  540 RFAKPLDHDLIRQFARHHEMVITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630          
The following BLAST results are available for this feature:
BLAST of CX296804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DXS_BARBK4.641e-1947.781-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_AGRRK6.061e-1950.551-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_AZOC57.916e-1950.561-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
DXS1_RHOS47.916e-1951.141-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_RHILO1.034e-1846.321-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_NOVAD1.034e-1848.311-deoxy-D-xylulose-5-phosphate synthase OS=Novosph... [more]
DXS_NITHX1.350e-1847.831-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS2_ROSDO1.350e-1850.001-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseo... [more]
DXS1_RHORT1.350e-1846.071-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_RHILW3.008e-1849.451-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionC05803A05SK FerrChloL1 Citrus clementina cDNA clone C05803A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296804 ID=CX296804; Name=CX296804; organism=Citrus clementina; type=EST; length=523bp
AAGATTTTGCAACCTTTGGATACAGACCTCATTAGACAGTTGGCCAATGA
GCATGAAATCCTAATTACTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCT
CTCATGTATGTCACTTTCTAACCTTAAGTGGCATTCTGGATGGACCTCTC
AAGTTGAGATCAATGGTGCTTCCTGATAGATACATTGACCATGGATCACC
AGCCGATCAGCTTGAAGAATCAGGGCTCTCCTCAAGGCATATCTCTGCAA
CAGTCTTATCTCTCTTAGGGAGGCCAAAAGAAGCCCTTCTGATTTAAGTA
ATCATACAAAATCAAACAACATCTTGCCCTTCGGATCCAACTTACAATTC
CAAGTTGGGGGTGTTATACACTATAAGGTCCAACTCTTAGAATCTTTACC
TTCATATCCCCTGTAACCATGAAGCATTACCGTGGGATTATAAATGTAAT
GGTCAAGCCTTTTGTTGTTTCTGTACATTCACAATTTTTTCTTGTAATAA
AGATACAAGGCATTGATCTTCAC
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