CX296804

Overview
NameCX296804
Unique NameCX296804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.752e-18
Identity = 49/94 (52.13%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD-GPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPK 279
            +  +PLD +L+ +LA  H  L+TVEEGSVGGFGSHV   +T  G+LD G +K+R+MVLPD YID  + A QL  +GL +  I A V  LLG+ K
Sbjct:  541 RFAKPLDRELVLKLAAGHGALVTVEEGSVGGFGSHVLQLVTDEGLLDRGAVKVRAMVLPDIYIDQETQARQLAAAGLDADAIVAKVEGLLGKAK 634          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PELUB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelagibacter ubique GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.143e-17
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 267
            +  +PLD +LI + A EHE +ITVEEGS+GGFGSHV + L+  GI D  LK R+M+LPD +I+  SP    + +GL++  IS  +L +L
Sbjct:  538 RFAKPLDQELILKCAREHEAMITVEEGSIGGFGSHVENLLSEKGIFDKGLKFRTMILPDIFIEQDSPKKMYDVAGLNASQISKKILDIL 626          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.143e-17
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            +  +PLD DLI QLA  HE LIT+EEG++GGFGSHV   L  +G+ D   + RSMVLPD +IDH S       +GL++  I    L  LG
Sbjct:  540 RFAKPLDRDLILQLAAHHEALITIEEGAIGGFGSHVAQLLAEAGVFDRGFRYRSMVLPDTFIDHNSAEVMYATAGLNAADIERKALETLG 629          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.493e-17
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 267
            +  +PLDT+LI QL   HE+++T+EE S+GG G+HV  + +  G+ D  LK+R+M LPD +I+  +P  Q +E+GL++ HI  TVL  L
Sbjct:  540 RFAKPLDTELIAQLMKNHEVVVTIEEASIGGLGAHVLTYASDEGLTDAGLKIRTMRLPDAFIEQDAPEKQYDEAGLTAPHIVDTVLKAL 628          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.950e-17
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 273
            +  +PLD +L+RQLA  HE+LITVEEGSVGGFGS V  +L+  G+LD  LK+RS+V+PD +++   P      +GL    I +TV   L R
Sbjct:  540 RFAKPLDHELLRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALRR 630          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.547e-17
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 267
            + L+P D +L+  LA  HE+LI VEEG++GGF SHV  +L   G+LDG LKLR++ +PDR+ +H +P  Q  ++G+ ++ I+  VL  L
Sbjct:  542 RFLKPFDEELVADLAARHEVLIVVEEGAIGGFCSHVATWLANQGLLDGGLKLRALHIPDRFFEHDAPEVQCAKAGIDAQAITTAVLDAL 630          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 288
            +  +PLD  +I+ L   HE+ +T+EEG++GG G+HV    +  G++DG LKLR+M LPD + +H  P  Q  E+GL +  I ATVL+ L R  + L
Sbjct:  540 RFAKPLDEAMIQTLLTSHEVAVTIEEGAIGGLGAHVLTLASDLGLIDGGLKLRTMRLPDAFQEHDKPEKQYAEAGLDAESIVATVLAALHRNSKGL 635          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.156e-16
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            +  +P+D  L+  LA +HE+ IT+EEG++GGF S V   L  +G+LD  +K R M LPDRYIDH +   Q E++GL++ HI  T    LG
Sbjct:  564 RFAKPIDKALVEDLARQHEVFITIEEGAIGGFSSLVVQHLAETGLLD-KVKFRPMALPDRYIDHNTQDAQYEDAGLTAPHIVRTAADALG 652          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.677e-16
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 294
            +  +PLDTDLI +L   H  LIT+E+G++GGFG+ V H+L  +G L+    +R+M LPD YIDHGSP +    +GL++  I  T L+   RP +++ I
Sbjct:  541 RFCRPLDTDLIDRLIEGHAALITLEQGAMGGFGAMVLHYLARTGQLEKGRAIRTMTLPDCYIDHGSPEEMYAWAGLTANDIRDTALA-AARPSKSVRI 637          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.070e-15
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            +  +PLD DL+ +LA EHE LITVEEG+VGGFG  V H L   G LD  LK+R++ LPD + D   P     ++GL +  I    L+ LG
Sbjct:  538 RFAKPLDVDLLLRLAREHEALITVEEGAVGGFGGFVLHALAEHGALDRGLKIRTLTLPDIFQDQDKPEAMYAQAGLDAEGIVRAALAALG 627          
The following BLAST results are available for this feature:
BLAST of CX296804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DXS_XANP28.752e-1852.131-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob... [more]
DXS_PELUB1.143e-1748.311-deoxy-D-xylulose-5-phosphate synthase OS=Pelagib... [more]
DXS2_RHOS41.143e-1748.891-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_ERYLH1.493e-1744.941-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_RHIEC1.950e-1748.351-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS2_RHORT2.547e-1744.941-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_SPHWW9.677e-1742.711-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_GLUOX2.156e-1645.561-deoxy-D-xylulose-5-phosphate synthase OS=Glucono... [more]
DXS_RHOCA3.677e-1643.881-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]
DXS_PHEZH1.070e-1546.671-deoxy-D-xylulose-5-phosphate synthase OS=Phenylo... [more]

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Properties
Property NameValue
Genbank descriptionC05803A05SK FerrChloL1 Citrus clementina cDNA clone C05803A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296804 ID=CX296804; Name=CX296804; organism=Citrus clementina; type=EST; length=523bp
AAGATTTTGCAACCTTTGGATACAGACCTCATTAGACAGTTGGCCAATGA
GCATGAAATCCTAATTACTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCT
CTCATGTATGTCACTTTCTAACCTTAAGTGGCATTCTGGATGGACCTCTC
AAGTTGAGATCAATGGTGCTTCCTGATAGATACATTGACCATGGATCACC
AGCCGATCAGCTTGAAGAATCAGGGCTCTCCTCAAGGCATATCTCTGCAA
CAGTCTTATCTCTCTTAGGGAGGCCAAAAGAAGCCCTTCTGATTTAAGTA
ATCATACAAAATCAAACAACATCTTGCCCTTCGGATCCAACTTACAATTC
CAAGTTGGGGGTGTTATACACTATAAGGTCCAACTCTTAGAATCTTTACC
TTCATATCCCCTGTAACCATGAAGCATTACCGTGGGATTATAAATGTAAT
GGTCAAGCCTTTTGTTGTTTCTGTACATTCACAATTTTTTCTTGTAATAA
AGATACAAGGCATTGATCTTCAC
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