CX296804

Overview
NameCX296804
Unique NameCX296804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15301 contig Ccv1_Contig15301:529..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS2_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Jannaschia sp. (strain CCS1) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.066e-15
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            +  +PLDT LI  L  +H  LITVE+G+V GFG  V H L  +G LDG   +R++ LPDR+ID  SPA+   ++GL++  I+   L  +G
Sbjct:  539 RFAKPLDTTLIDDLMTKHSALITVEQGAVLGFGGLVLHHLAATGQLDGRCAVRTLHLPDRFIDQASPAEMYADAGLTADDIAQAALEAMG 628          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.545e-14
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            +  +PLD D++ +LA EHE +ITVEEG++GGFG+ V   L   G LD  LK+R++VLPD + D   P     ++GL +  I    LS LG
Sbjct:  538 RFAKPLDVDMLLRLAREHEAIITVEEGAMGGFGAFVLQALATHGALDRGLKIRTLVLPDVFQDQDKPDLMYAQAGLDAEGILRGALSALG 627          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.635e-14
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            +  +PLD DL+ +LA EHE +ITVEEGS+GGFG+ V   L   G LD  LK+R++ LPD + D   P     ++GL +  I    LS +G
Sbjct:  538 RFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.635e-14
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            +  +PLD DL+ +LA EHE +ITVEEGS+GGFG+ V   L   G LD  LK+R++ LPD + D   P     ++GL +  I    LS +G
Sbjct:  538 RFAKPLDLDLLLRLAREHEAIITVEEGSMGGFGAFVLQALAQHGALDRGLKIRTLCLPDVFQDQDKPDAMYAQAGLDAEGILRGALSAMG 627          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.442e-14
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLL 267
            +  +PLD +LIR+    HE+ +TVEEGS+GG G+HV    +  G++D  LKLR++ LPD + D   P  Q + +GL++  I  TVL  L
Sbjct:  540 RFAKPLDEELIRRTLAAHEVCVTVEEGSIGGLGAHVLTLASDEGLIDAGLKLRTLRLPDMFQDQDKPELQYDAAGLNAPQIVDTVLKAL 628          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS1_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.495e-14
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 273
            +  +PLD  LI  L   H+ LITVE+G++ GFG+ V   +   G+LD   K+R+M LPDR+ID  +PA+   ++GL +  I   V  +LGR
Sbjct:  543 RFAKPLDMALIANLVQTHKALITVEQGAMAGFGAMVLQSMAAEGLLDLGCKVRTMCLPDRFIDQAAPAEMYRDAGLDTMGIVEQVTRVLGR 633          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS1_ZYMMO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymomonas mobilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.446e-12
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 273
            +  +PLD  L RQL   H+++IT+EEG++GGF + V    +  G++D  LK+R++ LPDR+        Q  E+GL +  I A V+S L R
Sbjct:  540 RFAKPLDEALTRQLLKSHQVIITIEEGALGGFATQVLTMASDEGLMDDGLKIRTLRLPDRFQPQDKQERQYAEAGLDADGIVAAVISALHR 630          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.467e-12
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGL 228
            + ++PLD  LIR+LA+ H++L+TVEE +V GG GS V  +L  +G LD P  +R + LPDR++DHG+PA+ L E GL
Sbjct:  534 RFVRPLDEALIRELADTHDLLVTVEENAVAGGAGSGVSEYLARAG-LDVP--VRHLGLPDRFVDHGTPAELLAEVGL 607          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PSEU5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.221e-12
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGR 273
            + ++PLD  L+R+LA  HE+L+TVEE S+ GG GS V  FL   G+L   L L    LPD Y++H  P++ L E GL +  I   V   L+ LG+
Sbjct:  540 RFVKPLDEALLRELAGSHELLVTVEENSIMGGAGSAVAEFLAAEGVLRPILHLG---LPDYYVEHAKPSEMLAECGLDAAGIEVAVRKRLAALGK 631          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_RALEJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 270
            + ++PLD +L+++LA EH  L+TVEEGSV GG GS V   L  +GI D P+ +  + LPDR+IDHG PA  L + GL +  I  +V    G
Sbjct:  538 RFVKPLDVELVKRLAEEHNYLVTVEEGSVMGGAGSAVLEALAEAGI-DIPVLV--LGLPDRFIDHGDPALLLSQCGLDAAGIERSVRERFG 625          
The following BLAST results are available for this feature:
BLAST of CX296804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DXS2_JANSC4.066e-1544.441-deoxy-D-xylulose-5-phosphate synthase 2 OS=Janna... [more]
DXS_CAUSK1.545e-1444.441-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCR2.635e-1444.441-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN2.635e-1444.441-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_SPHAL3.442e-1442.701-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS1_ROSDO4.495e-1441.761-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseo... [more]
DXS1_ZYMMO1.446e-1239.561-deoxy-D-xylulose-5-phosphate synthase 1 OS=Zymom... [more]
DXS_ALHEH2.467e-1250.651-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]
DXS_PSEU53.221e-1243.161-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_RALEJ4.207e-1246.151-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]

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Properties
Property NameValue
Genbank descriptionC05803A05SK FerrChloL1 Citrus clementina cDNA clone C05803A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296804 ID=CX296804; Name=CX296804; organism=Citrus clementina; type=EST; length=523bp
AAGATTTTGCAACCTTTGGATACAGACCTCATTAGACAGTTGGCCAATGA
GCATGAAATCCTAATTACTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCT
CTCATGTATGTCACTTTCTAACCTTAAGTGGCATTCTGGATGGACCTCTC
AAGTTGAGATCAATGGTGCTTCCTGATAGATACATTGACCATGGATCACC
AGCCGATCAGCTTGAAGAATCAGGGCTCTCCTCAAGGCATATCTCTGCAA
CAGTCTTATCTCTCTTAGGGAGGCCAAAAGAAGCCCTTCTGATTTAAGTA
ATCATACAAAATCAAACAACATCTTGCCCTTCGGATCCAACTTACAATTC
CAAGTTGGGGGTGTTATACACTATAAGGTCCAACTCTTAGAATCTTTACC
TTCATATCCCCTGTAACCATGAAGCATTACCGTGGGATTATAAATGTAAT
GGTCAAGCCTTTTGTTGTTTCTGTACATTCACAATTTTTTCTTGTAATAA
AGATACAAGGCATTGATCTTCAC
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