CX296804

Overview
NameCX296804
Unique NameCX296804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15301 contig Ccv1_Contig15301:529..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.562e-11
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGR 273
            + ++P+D  L+R++AN H++L+T+EE ++ GG G  V  FL    IL   L L    LPD Y++H  PA  L E GL    I A V   L LL R
Sbjct:  541 RFVKPMDEALVREIANSHDLLVTIEENAIMGGAGGAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEVGIEAAVRERLELLNR 632          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 255
            + ++PLD  L+R++A  HE+L+TVEE ++ GG G+ V  FL    IL   L L    LPD Y++H  PA  L E GL    I A+V
Sbjct:  541 RFVKPLDEALVREIAGGHELLVTVEENAIMGGAGAAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEAGIEASV 623          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 270
            + ++PLD  L+R+ A  HE+L+T+EE +V GG G+ V  FL  + IL   L L    LPD Y++H  PA  L E GL +  I A +   L+L+G
Sbjct:  541 RFVKPLDEALVRETAASHELLVTLEENAVMGGAGAAVSEFLARANILKSVLHLG---LPDVYVEHAKPAQMLAECGLDAEGIEAAINERLALIG 631          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 255
            + ++PLDT LIRQLA  HE+L+TVEE  V GG GS V   L  +GI    + + ++ LPD Y++HG PA  L + GL +  I  +V
Sbjct:  529 RFVKPLDTALIRQLAASHELLVTVEENVVMGGTGSAVLETLAAAGI---TVPVLNLGLPDHYVEHGDPALLLADCGLDTAGIVRSV 611          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_DEHSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 32/95 (33.68%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 282
            + + PLD++L+ ++A  H+ L+TVEE  + GG GS +   L  +G+++  +K+ ++ +PD++++HG+ +    + GL  + I+  VLSL+G P E
Sbjct:  545 RYISPLDSELVLKIAQSHKYLVTVEENVISGGLGSRINTLLAEAGLVN-KIKIANIGIPDKFVEHGNQSLLRAKYGLDGKGIAQRVLSLVGNPNE 638          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_DEHSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain BAV1) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11
Identity = 32/95 (33.68%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 282
            + + PLD++L+ ++A  H+ L+TVEE  + GG GS +   L  +G+++  +K+ ++ +PD++++HG+ +    + GL  + I+  VLSL+G P E
Sbjct:  531 RYISPLDSELVLKIAQSHKYLVTVEENVISGGLGSRINTLLAEAGLVN-KIKIANIGIPDKFVEHGNQSLLRAKYGLDGKGIAQRVLSLVGNPNE 624          
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PSEA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 273
            + ++PLD  L+R+LA  HE+L+++EE +V GG GS V  FL   G+    + L  + LPD Y++H  P++ L E GL +  I   V   L R
Sbjct:  538 RFVKPLDEALVRELAGSHELLVSIEENAVMGGAGSAVGEFLAREGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626          
The following BLAST results are available for this feature:
BLAST of CX296804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DXS_PSEPF3.562e-1141.051-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEFS4.652e-1143.021-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSESM6.075e-1141.491-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_LARHH6.075e-1145.351-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]
DXS_DEHSC6.075e-1133.681-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc... [more]
DXS_DEHSB6.075e-1133.681-deoxy-D-xylulose-5-phosphate synthase OS=Dehaloc... [more]
DXS_PSEA77.935e-1139.131-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionC05803A05SK FerrChloL1 Citrus clementina cDNA clone C05803A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296804 ID=CX296804; Name=CX296804; organism=Citrus clementina; type=EST; length=523bp
AAGATTTTGCAACCTTTGGATACAGACCTCATTAGACAGTTGGCCAATGA
GCATGAAATCCTAATTACTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCT
CTCATGTATGTCACTTTCTAACCTTAAGTGGCATTCTGGATGGACCTCTC
AAGTTGAGATCAATGGTGCTTCCTGATAGATACATTGACCATGGATCACC
AGCCGATCAGCTTGAAGAATCAGGGCTCTCCTCAAGGCATATCTCTGCAA
CAGTCTTATCTCTCTTAGGGAGGCCAAAAGAAGCCCTTCTGATTTAAGTA
ATCATACAAAATCAAACAACATCTTGCCCTTCGGATCCAACTTACAATTC
CAAGTTGGGGGTGTTATACACTATAAGGTCCAACTCTTAGAATCTTTACC
TTCATATCCCCTGTAACCATGAAGCATTACCGTGGGATTATAAATGTAAT
GGTCAAGCCTTTTGTTGTTTCTGTACATTCACAATTTTTTCTTGTAATAA
AGATACAAGGCATTGATCTTCAC
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