CX296804
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PSEPF (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=dxs PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.562e-11 Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 1 Query: 1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLGR 273 + ++P+D L+R++AN H++L+T+EE ++ GG G V FL IL L L LPD Y++H PA L E GL I A V L LL R Sbjct: 541 RFVKPMDEALVREIANSHDLLVTIEENAIMGGAGGAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEVGIEAAVRERLELLNR 632
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11 Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 255 + ++PLD L+R++A HE+L+TVEE ++ GG G+ V FL IL L L LPD Y++H PA L E GL I A+V Sbjct: 541 RFVKPLDEALVREIAGGHELLVTVEENAIMGGAGAAVSEFLARENILKSVLHLG---LPDVYVEHAKPAQMLAECGLDEAGIEASV 623
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11 Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 1 Query: 1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV---LSLLG 270 + ++PLD L+R+ A HE+L+T+EE +V GG G+ V FL + IL L L LPD Y++H PA L E GL + I A + L+L+G Sbjct: 541 RFVKPLDEALVRETAASHELLVTLEENAVMGGAGAAVSEFLARANILKSVLHLG---LPDVYVEHAKPAQMLAECGLDAEGIEAAINERLALIG 631
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11 Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1 Query: 1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATV 255 + ++PLDT LIRQLA HE+L+TVEE V GG GS V L +GI + + ++ LPD Y++HG PA L + GL + I +V Sbjct: 529 RFVKPLDTALIRQLAASHELLVTVEENVVMGGTGSAVLETLAAAGI---TVPVLNLGLPDHYVEHGDPALLLADCGLDTAGIVRSV 611
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_DEHSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=dxs PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11 Identity = 32/95 (33.68%), Postives = 62/95 (65.26%), Query Frame = 1 Query: 1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 282 + + PLD++L+ ++A H+ L+TVEE + GG GS + L +G+++ +K+ ++ +PD++++HG+ + + GL + I+ VLSL+G P E Sbjct: 545 RYISPLDSELVLKIAQSHKYLVTVEENVISGGLGSRINTLLAEAGLVN-KIKIANIGIPDKFVEHGNQSLLRAKYGLDGKGIAQRVLSLVGNPNE 638
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_DEHSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Dehalococcoides sp. (strain BAV1) GN=dxs PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 6.075e-11 Identity = 32/95 (33.68%), Postives = 62/95 (65.26%), Query Frame = 1 Query: 1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKE 282 + + PLD++L+ ++A H+ L+TVEE + GG GS + L +G+++ +K+ ++ +PD++++HG+ + + GL + I+ VLSL+G P E Sbjct: 531 RYISPLDSELVLKIAQSHKYLVTVEENVISGGLGSRINTLLAEAGLVN-KIKIANIGIPDKFVEHGNQSLLRAKYGLDGKGIAQRVLSLVGNPNE 624
BLAST of CX296804 vs. ExPASy Swiss-Prot
Match: DXS_PSEA7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=dxs PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11 Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1 Query: 1 KILQPLDTDLIRQLANEHEILITVEEGSV-GGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 273 + ++PLD L+R+LA HE+L+++EE +V GG GS V FL G+ + L + LPD Y++H P++ L E GL + I V L R Sbjct: 538 RFVKPLDEALVRELAGSHELLVSIEENAVMGGAGSAVGEFLAREGL---EVPLLQLGLPDYYVEHAKPSEMLAECGLDAAGIEKAVRQRLDR 626 The following BLAST results are available for this feature:
BLAST of CX296804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296804 ID=CX296804; Name=CX296804; organism=Citrus clementina; type=EST; length=523bpback to top |