CX296809

Overview
NameCX296809
Unique NameCX296809
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296809 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 48/132 (36.36%), Postives = 70/132 (53.03%), Query Frame = 3
Query:   30 LSTRDATIA-GYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETELRFLSFSRGRRGCMGMALGSEMSVMLLARLLQGFNWSTPSDEEMVDLSE-SKCDLLMAKPLHARAKPRLP 419
            LST D  +  G  +P G+  +++   +  +PN+W+ P +F PER +  V +   +V++   +LR   F  GRR C G ALG     + +A+LL  F W  P  E  VDLSE  K    MA+PLH     R+P
Sbjct:  419 LSTEDVNMGDGMCVPAGTTAMVNMWSITHDPNIWESPYEFRPERFV--VFEGGEEVDVRGNDLRLAPFGAGRRVCPGKALGLATVNLWVAKLLHHFEW-LPHAEHPVDLSEVLKLSCEMARPLHCVPVTRVP 547          
BLAST of CX296809 vs. ExPASy Swiss-Prot
Match: C71BC_ARATH (Cytochrome P450 71B12 OS=Arabidopsis thaliana GN=CYP71B12 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 3
Query:   21 LPHLSTRDATIAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETELRFLSFSRGRRGCMGMALGSEMSVMLLARLLQGFNWSTPSDEEM--VDLSES 362
            +P  +++D  I GY IPK + + ++   + RNPNVWKDP  FIPER + S      Q++        L F  GRR C G+ +G  +  + L  LL  F+W  P   ++  VDL ES
Sbjct:  366 IPREASKDVKIGGYNIPKKTWIHVNIWAIHRNPNVWKDPEAFIPERFMDS------QIDYKGLNFELLPFGSGRRICPGIGMGMALVHLTLINLLYRFDWKLPEGMKVADVDLEES 475          
BLAST of CX296809 vs. ExPASy Swiss-Prot
Match: C71BD_ARATH (Cytochrome P450 71B13 OS=Arabidopsis thaliana GN=CYP71B13 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.928e-14
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 3
Query:   24 PHLSTRDATIAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETELRFLSFSRGRRGCMGMALGSEMSVMLLARLLQGFNWSTPSDEEM--VDLSES 362
            P  +++D  I GY IPK + + ++   + RNPNVWKDP  FIPER +       +Q++        L F  GRR C G+ +G  +  + L  LL  F+W  P   E+  VDL ES
Sbjct:  367 PREASKDVKIGGYNIPKKTWIHVNIWAIHRNPNVWKDPEAFIPERFM------DNQIDYKGLNFELLPFGSGRRICPGIGMGMALIHLTLINLLYRFDWKLPEGMEVEDVDLEES 475          
BLAST of CX296809 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.166e-13
Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 3
Query:   21 LPHLSTRDATIAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETELRFLSFSRGRRGCMGMALGSEMSVMLLARLLQGFNWSTPSDEEMVDLSE 359
            +PH++  DA +AGY IP  S +L++   L  NPN WK P +F PER      +    VE    + R++ F  GRR C G+ L   +  + + R++Q F    P  +  VD SE
Sbjct:  375 VPHMNLHDAKLAGYDIPAESKILVNAWWLANNPNSWKKPEEFRPERFF----EEESHVEANGNDFRYVPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKVDTSE 483          
BLAST of CX296809 vs. ExPASy Swiss-Prot
Match: C82A3_SOYBN (Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.166e-13
Identity = 50/137 (36.50%), Postives = 68/137 (49.64%), Query Frame = 3
Query:   24 PHLSTRDATIAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETELRFLSFSRGRRGCMGMALGSEMSVMLLARLLQGFNWSTPSDEEMVDLSE-SKCDLLMAKPLHARAKPRLPADLY 431
            P   T +  + GY I KG+ ++ +   + R+P+VW DPL+F PER + +    H  V+L       L F  GRR C GM+LG  M    LA LL  F+   PS  E VD++E        A PL    KPR   + Y
Sbjct:  393 PREFTENCILGGYHIKKGTRLIHNLWKIHRDPSVWSDPLEFKPERFLTT----HKDVDLRGHNFELLPFGSGRRVCAGMSLGLNMVHFTLANLLHSFDILNPS-AEPVDMTEFFGFTNTKATPLEILVKPRQSPNYY 524          
BLAST of CX296809 vs. ExPASy Swiss-Prot
Match: C71C1_MAIZE (Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.166e-13
Identity = 44/137 (32.12%), Postives = 70/137 (51.09%), Query Frame = 3
Query:   21 LPHLSTRDATIAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETELRFLSFSRGRRGCMGMALGSEMSVMLLARLLQGFNWSTPSDEE----MVDLSESKCDLLMAKPLHARAKPRLP 419
            LPH ST D  I GY IP G+ V+++   L R+P  W    +F PER +    D   +V++   ++RF+ F  GRR C G         ++LA L+  F+W  P++ E     VD+S+ +  + + +       PR+P
Sbjct:  396 LPHFSTHDCEINGYTIPAGTRVIVNAWALARDPTCWDKAEEFFPERFLEQGRD--AEVDMYGKDIRFVPFGAGRRICAGATFAIATVEIMLANLIYHFDWEMPAEMERTGAKVDMSD-QFGMTLRRTQKLYLVPRIP 529          
BLAST of CX296809 vs. ExPASy Swiss-Prot
Match: C71BU_ARATH (Cytochrome P450 71B31 OS=Arabidopsis thaliana GN=CYP71B31 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.166e-13
Identity = 46/134 (34.33%), Postives = 67/134 (50.00%), Query Frame = 3
Query:   21 LPHLSTRDATIAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETELRFLSFSRGRRGCMGMALGSEMSVMLLARLLQGFNWSTPSDEEMVDLS-ESKCDLLMAKPLHARAKPRLP 419
            LP  +  D  I GY IPK +HV ++   +GR+P  W +P +F PER + +  ++  Q          L F  GRR C GM LG  +  + L  +L  F+WS PS   + D+  E    L +AK +  +  P LP
Sbjct:  371 LPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQ------HYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP 498          
BLAST of CX296809 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.989e-13
Identity = 46/133 (34.59%), Postives = 65/133 (48.87%), Query Frame = 3
Query:   21 LPHLSTRDATIAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETELRFLSFSRGRRGCMGMALGSEMSVMLLARLLQGFNWSTPSDEEMVDLSE--SKCDLLMAKPLHARAKPR 413
            +PH++  DA + GY IP  S +L++   L  NP  WK P +F PER      +    VE    + R+L F  GRR C G+ L   +  + L RL+Q F    P  +  +D SE   +  L + K     AKPR
Sbjct:  375 VPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFF----EEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSQIDTSEKGGQFSLHILKHSTVVAKPR 503          
BLAST of CX296809 vs. ExPASy Swiss-Prot
Match: C71A1_PERAE (Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.989e-13
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 3
Query:   21 LPHLSTRDATIAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETELRFLSFSRGRRGCMGMALGSEMSVMLLARLLQGFNWSTP 329
            +P  STRD  I GY IP  + V ++   +GR+P  W++  +F+PER +      ++ V+    + + + F  GRRGC G+A G     + LA LL  FNW  P
Sbjct:  373 VPRESTRDVVIRGYHIPAKTRVFINAWAIGRDPKSWENAEEFLPERFV------NNSVDFKGQDFQLIPFGAGRRGCPGIAFGISSVEISLANLLYWFNWELP 469          
BLAST of CX296809 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.598e-13
Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 3
Query:   21 LPHLSTRDATIAGYFIPKGSHVLLSRIGLGRNPNVWKDPLKFIPERHIGSVDDHHHQVELAETELRFLSFSRGRRGCMGMALGSEMSVMLLARLLQGFNWSTPSDEEMVDLSE 359
            LPH++  DA + GY IP  S +L++   L  NP  WK P +F PER +    +   +VE    + R+L F  GRR C G+ L   +  + + RL+Q F    P  +  +D SE
Sbjct:  375 LPHMNLHDAKLGGYDIPAESKILVNAWFLANNPEHWKKPEEFRPERFL----EEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGKSKIDTSE 483          
The following BLAST results are available for this feature:
BLAST of CX296809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
C78A4_PINRA6.836e-1436.36Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
C71BC_ARATH6.836e-1437.07Cytochrome P450 71B12 OS=Arabidopsis thaliana GN=C... [more]
C71BD_ARATH8.928e-1437.39Cytochrome P450 71B13 OS=Arabidopsis thaliana GN=C... [more]
TCMO_ARATH1.166e-1335.40Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
C82A3_SOYBN1.166e-1336.50Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=... [more]
C71C1_MAIZE1.166e-1332.12Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 S... [more]
C71BU_ARATH1.166e-1334.33Cytochrome P450 71B31 OS=Arabidopsis thaliana GN=C... [more]
TCMO_PHAAU1.989e-1334.59Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
C71A1_PERAE1.989e-1335.92Cytochrome P450 71A1 OS=Persea americana GN=CYP71A... [more]
TCMO_CATRO2.598e-1335.40Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]

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Properties
Property NameValue
Genbank descriptionC05803A12SK FerrChloL1 Citrus clementina cDNA clone C05803A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296809 ID=CX296809; Name=CX296809; organism=Citrus clementina; type=EST; length=560bp
CCGAATTCGGCACGAGGAACCTGCCTCATCTTTCAACTCGCGATGCCACT
ATCGCCGGTTACTTCATTCCCAAAGGCAGTCACGTTCTGCTGAGCCGAAT
AGGGCTTGGCCGGAACCCTAACGTCTGGAAAGATCCATTGAAATTCATAC
CTGAACGTCATATTGGTTCAGTGGACGATCATCATCATCAAGTAGAGTTG
GCGGAAACAGAATTACGATTCCTTTCATTCAGCAGAGGAAGACGCGGTTG
CATGGGCATGGCACTTGGGTCCGAGATGTCTGTAATGCTTTTGGCAAGGC
TTCTTCAAGGTTTTAATTGGAGCACGCCATCGGATGAGGAGATGGTTGAC
CTTTCCGAGTCAAAATGCGACCTCCTAATGGCTAAGCCACTGCATGCTCG
TGCAAAGCCCCGCTTGCCTGCTGATTTATACCCAGCTAATAATTAAATGA
TGTTAACCGTTCTTTATGTTATCTTCATTCTTTAATTTAATGTAATTCTT
CATTATCTCACGATTTATCTATCTTGAACGCTTTGCCATCTCGAAAAGGG
GGGGCCCGGT
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