CX296823

Overview
NameCX296823
Unique NameCX296823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.926e-14
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKP 292
            ++  L YLH      + HRDIK +N+L++D    ++ DFG +R         TT V GT GY+ PE  ++ + +  SDV++FGV+L+EI++G++P
Sbjct:  471 IASGLLYLHEEWEKVVIHRDIKPSNVLIEDDMNPRLGDFGLARLYERGSQSNTTVVVGTIGYMAPELARNGKSSSASDVFAFGVLLLEIVSGRRP 565          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 2
Query:   17 ALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLV 331
            AL YLH   S  I  ++IKSANILLD +    +SD G +  +      L    Q   GY  PE   S Q++ KSD+YSFGVV++E+LTG+KP  +  +  ++SLV
Sbjct:  528 ALEYLHEVCSPSIVDKNIKSANILLDSELNPHLSDSGLASFLPTANELLN---QTDEGYSAPEVSMSGQYSLKSDIYSFGVVMLELLTGRKPFDSTRSRSEQSLV 629          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: SPKA_DICDI (Stress-activated protein kinase alpha OS=Dictyostelium discoideum GN=spkA-1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 2
Query:   50 PIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILT 280
            PI HRD+KS N+L++DK+  KV DFG SR           K++GTF Y  PE +   QF+ KSDVYS  V+L E++T
Sbjct:  467 PIVHRDLKSLNLLVNDKWEIKVCDFGLSRFNTGSNLETLVKMRGTFAYCAPEVYYGEQFSGKSDVYSIAVILWELVT 543          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSV-MVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAI-NTDEDKSLV 331
            V+  L YLH      + H D+K  NILLD  +  K++DFG  + +     T   + V+GT GY+ PE+  S   T K DVYS+GVVL+E+LTG +    +  TDE  S++
Sbjct:  639 VAKGLAYLHHECLEWVIHCDVKPENILLDQAFEPKITDFGLVKLLNRGGSTQNVSHVRGTLGYIAPEWVSSLPITAKVDVYSYGVVLLELLTGTRVSELVGGTDEVHSML 748          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: KINX_DICDI (Probable serine/threonine-protein kinase kinX OS=Dictyostelium discoideum GN=kinX PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 2
Query:    2 VEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKP 292
            ++VS A+ YLHS +   I HRD+KS N+L+D  ++ KV DFG +R V  D     T + GT  ++ PE      + E+SD++SFG+VL+EI++  KP
Sbjct:  128 LDVSLAMSYLHSKS---IVHRDLKSTNLLVDKNWKIKVCDFGFARIVEEDNNKSMT-ICGTDNWMSPEMITGLDYDERSDIFSFGIVLLEIISRVKP 220          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: CRK22_ARATH (Cysteine-rich receptor-like protein kinase 22 OS=Arabidopsis thaliana GN=CRK22 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTK-VQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDE 316
            ++  + +LH    + I +RD K++NILLD     K+SDFG +    ++++   T  +  TF Y+ PEY    +F+ KSDVYSFG++++EI++G+K       DE
Sbjct:  459 IAQGILHLHQDPQLTIIYRDFKASNILLDADMNPKISDFGMATVFGMEESRGNTNWIAETFVYMSPEYAVHGKFSMKSDVYSFGILILEIISGKKNSSLYQNDE 562          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: YR831_MIMIV (Putative serine/threonine-protein kinase/receptor R831 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R831 PE=4 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.286e-14
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 2
Query:   26 YLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAIN 307
            YLHS+  + I HRDIK ANIL+D+ +  K++DFG +R +  D T +T    GT  +  PE  +  ++ EK+DV+SFGVV+ E+LTG++P    N
Sbjct: 1475 YLHSSNPM-IVHRDIKPANILVDEHFNVKIADFGFAR-IKEDNTTMTRC--GTPCWTAPEVIRGEKYCEKADVFSFGVVMWEVLTGKEPFAECN 1564          

HSP 2 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 2
Query:    5 EVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFG-TSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTE--KSDVYSFGVVLVEILTGQKPIRAI 304
            + S  + +LHS+    I HRD+KS N+LLD K+  KVSDFG T     +D+      + GT  ++ PE    S   +   +DVYSFG++L E+LT ++P + +
Sbjct:  891 QASKGMHFLHSSG---IVHRDLKSLNLLLDSKWNVKVSDFGLTKVKSELDKKKTNDNIIGTIHWIAPEILNDSTEVDYILADVYSFGIILWELLTREQPYKGM 990          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.286e-14
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 2
Query:    2 VEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQ-THLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQK 289
            +E + AL YLH     P  HR+ KSANILLDD  R  VSD G +  +     + L+ ++   +GY  PE F+   +T K DVYSFGVV++E+LTG+K
Sbjct:  585 LEAAKALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLAPLISSGAVSQLSGQLLAAYGYGAPE-FEYGIYTMKCDVYSFGVVMLELLTGRK 680          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.286e-14
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 2
Query:   20 LFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAIN 307
            LFYLH+ A+I   H ++ S+N+LLD+   AK+SD+G SR +            G  GY  PE  +  +   K+DVYS GV+++E+LTG+ P  A+N
Sbjct:  599 LFYLHTHANI--IHGNLTSSNVLLDENITAKISDYGLSRLMTAAAGSSVIATAGALGYRAPELSKLKKANTKTDVYSLGVIILELLTGKSPSEALN 692          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: LRKA1_ARATH (Lectin-domain containing receptor kinase A4.1 OS=Arabidopsis thaliana GN=LECRKA4.1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKP 292
            ++  L YLH      + HRD+K +N+L+D K   ++ DFG +R         TT + GT GY+ PE  ++   +  SDV++FGV+L+EI+ G+KP
Sbjct:  475 IASGLLYLHEEWEKIVIHRDVKPSNVLIDSKMNPRLGDFGLARLYERGTLSETTALVGTIGYMAPELSRNGNPSSASDVFAFGVLLLEIVCGRKP 569          
The following BLAST results are available for this feature:
BLAST of CX296823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
LRKA2_ARATH1.926e-1437.89Lectin-domain containing receptor kinase A4.2 OS=A... [more]
SRF6_ARATH2.516e-1442.86Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
SPKA_DICDI2.516e-1448.05Stress-activated protein kinase alpha OS=Dictyoste... [more]
KPRO_MAIZE2.516e-1440.00Putative receptor protein kinase ZmPK1 OS=Zea mays... [more]
KINX_DICDI2.516e-1442.27Probable serine/threonine-protein kinase kinX OS=D... [more]
CRK22_ARATH2.516e-1436.54Cysteine-rich receptor-like protein kinase 22 OS=A... [more]
YR831_MIMIV3.286e-1444.68Putative serine/threonine-protein kinase/receptor ... [more]
SRF1_ARATH3.286e-1445.36Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
IMK3_ARATH3.286e-1440.63Probable leucine-rich repeat receptor-like protein... [more]
LRKA1_ARATH4.291e-1437.89Lectin-domain containing receptor kinase A4.1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05803C02SK FerrChloL1 Citrus clementina cDNA clone C05803C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296823 ID=CX296823; Name=CX296823; organism=Citrus clementina; type=EST; length=381bp
TGTAGAAGTTTCAGGTGCTCTTTTCTACTTGCATTCAGCTGCTTCCATCC
CTATTTATCATCGAGACATCAAGTCCGCAAACATACTTTTGGACGATAAA
TATCGAGCCAAAGTTTCGGATTTTGGAACTTCAAGATCTGTTATGGTTGA
TCAAACTCATTTGACCACAAAAGTTCAAGGAACTTTTGGATACGTAGATC
CAGAGTATTTTCAGTCAAGTCAATTCACTGAAAAAAGTGATGTTTATAGT
TTTGGAGTAGTTCTTGTTGAGATTTTAACTGGACAGAAACCTATTCGTGC
AATCAACACTGATGAAGACAAAAGTTTAGTGGGATATTTTCTCCAAGCAA
TTAACGAGAACCGTTTGTTTGAAGCCCTTGA
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