CX296823

Overview
NameCX296823
Unique NameCX296823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: Y2350_DICDI (Probable serine/threonine-protein kinase DDB_G0292350 OS=Dictyostelium discoideum GN=DDB_G0292350 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.400e-11
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = 2
Query:    5 EVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGYFLQAINENRL 367
            E+   L YL S     I HRD+KS NILL  K + K++DFG + +  + +    T++ GT G + PE  +   +  +SD+YS G +++E+  G  P       +D SL   F  AI++ +L
Sbjct: 1046 ELLEGLVYLRSKG---IIHRDLKSRNILLTRKGKVKIADFGLATTCSLGRGR--TRMCGTMGRIAPEVIRREPYDTQSDIYSLGCLIIEMAEGTVPY-----GKDSSLKALFYTAIHQYKL 1156          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: SPKA_SYNY3 (Serine/threonine-protein kinase A OS=Synechocystis sp. (strain PCC 6803) GN=spkA PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.400e-11
Identity = 31/93 (33.33%), Postives = 51/93 (54.84%), Query Frame = 2
Query:   29 LHSAASIPIYHRDIKSANILLDDKYR----AKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPI 295
            ++   + P+ HRDIK +N+LL +        K+ DFG ++ V   +   T    GT  Y  PE  +  +   +SD+YS GV++ E+LTG+ P+
Sbjct:  136 IYQGEACPVVHRDIKPSNVLLVEDPALGELVKILDFGIAKLVQAAEESKTQAFMGTLAYCSPEQMEGKELDSRSDIYSLGVMMYEMLTGEMPL 228          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: PRKC_BACSU (Serine/threonine-protein kinase prkC OS=Bacillus subtilis GN=prkC PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.400e-11
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:   53 IYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKP 292
            I HRDIK  NIL+D     KV+DFG + ++       T  V G+  Y+ PE  +    T+KSD+Y+ G+VL E+LTG+ P
Sbjct:  130 IVHRDIKPHNILIDHMGNIKVTDFGIATALSSTTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGRIP 209          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: PKNA2_BIFLO (Probable serine/threonine-protein kinase pknA2 OS=Bifidobacterium longum GN=pknA2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.400e-11
Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAIN 307
            V+  L  L SA    + HRDIK  NIL++D+   +++DFG +++        T  + GT  Y+ PE  +++Q T + D+YS G++  E+LTG+ P  + N
Sbjct:  121 VAETLDGLASAHRAGVVHRDIKPENILINDRGHVQITDFGLAKAASQATLSSTGMLLGTAAYLAPEMIENNQATAQGDLYSVGIMAWEMLTGKVPFDSDN 220          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: PKN1_THETN (Probable serine/threonine-protein kinase Sps1 OS=Thermoanaerobacter tengcongensis GN=sps1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.400e-11
Identity = 42/105 (40.00%), Postives = 57/105 (54.29%), Query Frame = 2
Query:   53 IYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGYFLQAINENRL 367
            I HRDIK  NIL+ D+   KV+DFG +R+        T  V GT  Y  PE  + S   E++D+YS G+VL E+LTG+ P       E  S +   L+ I E+ L
Sbjct:  130 IIHRDIKPQNILVTDEDVVKVTDFGIARAANGATITYTGDVIGTAYYFSPEQAKGSIVDERTDIYSLGIVLFEMLTGKVPF------EGDSPISVALKHIQEDIL 228          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: TNI3K_MOUSE (Serine/threonine-protein kinase TNNI3K OS=Mus musculus GN=Tnni3k PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.441e-11
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    2 VEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYF-QSSQFTEKSDVYSFGVVLVEILTGQKP 292
            V+V+  + YLHS    PI HRD+ S NILL +   A V+DFG SR +        TK  G   ++ PE F Q +++T K+DV+S+ + L E+L G+ P
Sbjct:  567 VDVAKGMEYLHSLTQ-PIIHRDLNSHNILLYEDGHAVVADFGESRFLQSLDEDNMTKQPGNLRWMAPEVFTQCTRYTIKADVFSYALCLWELLIGEIP 663          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: PKNL_MYCTU (Probable serine/threonine-protein kinase pknL OS=Mycobacterium tuberculosis GN=pknL PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.441e-11
Identity = 37/95 (38.95%), Postives = 50/95 (52.63%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKP 292
            V G L   H A  +   HRD+K  NIL+ D    K++DFG  R+V       T  + GT  Y+ PE  +      +SDVYS GV++ E+LTG  P
Sbjct:  126 VLGGLAAAHRAGLV---HRDVKPENILISDDGDVKLADFGLVRAVAAASITSTGVILGTAAYLSPEQVRDGNADPRSDVYSVGVLVYELLTGHTP 217          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: PKNL_MYCBO (Probable serine/threonine-protein kinase pknL OS=Mycobacterium bovis GN=pknL PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.441e-11
Identity = 37/95 (38.95%), Postives = 50/95 (52.63%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKP 292
            V G L   H A  +   HRD+K  NIL+ D    K++DFG  R+V       T  + GT  Y+ PE  +      +SDVYS GV++ E+LTG  P
Sbjct:  126 VLGGLAAAHRAGLV---HRDVKPENILISDDGDVKLADFGLVRAVAAASITSTGVILGTAAYLSPEQVRDGNADPRSDVYSVGVLVYELLTGHTP 217          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: IRAK1_MOUSE (Interleukin-1 receptor-associated kinase 1 OS=Mus musculus GN=Irak1 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.441e-11
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   17 ALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSR--------SVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIR 298
            A+ +LH   S  + H DIKS+N+LLD++   K+ DFG +R        +        T+ V+GT  Y+  EY ++ +    +D +SFGVV++E L GQ+ +R
Sbjct:  325 AIQFLHQD-SPSLIHGDIKSSNVLLDERLMPKLGDFGLARFSRFAGAKASQSSTVARTSTVRGTLAYLPEEYIKTGRLAVDTDTFSFGVVILETLAGQRAVR 425          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: GDT4_DICDI (Probable serine/threonine-protein kinase gdt4 OS=Dictyostelium discoideum GN=gdt4 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.441e-11
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 2
Query:    2 VEVSGALFYLHSAASIPIYHRDIKSANILL-----DDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAI 304
            +++S A  +LH      I HRD+K  N+L+     D    AK+SDFGT R +  +  H      GT  Y+ PE  +   +T  +DVYSF ++  E+L+G+ P R I
Sbjct: 1448 LDISRACSFLHKNG---IIHRDLKPDNVLIVSFDPDSSICAKISDFGTCREI--NGKHELNSKAGTTRYMSPEILEGLPYTYSTDVYSFAILFFELLSGRVPFREI 1548          
The following BLAST results are available for this feature:
BLAST of CX296823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
Y2350_DICDI3.400e-1133.88Probable serine/threonine-protein kinase DDB_G0292... [more]
SPKA_SYNY33.400e-1133.33Serine/threonine-protein kinase A OS=Synechocystis... [more]
PRKC_BACSU3.400e-1142.50Serine/threonine-protein kinase prkC OS=Bacillus s... [more]
PKNA2_BIFLO3.400e-1135.00Probable serine/threonine-protein kinase pknA2 OS=... [more]
PKN1_THETN3.400e-1140.00Probable serine/threonine-protein kinase Sps1 OS=T... [more]
TNI3K_MOUSE4.441e-1140.82Serine/threonine-protein kinase TNNI3K OS=Mus musc... [more]
PKNL_MYCTU4.441e-1138.95Probable serine/threonine-protein kinase pknL OS=M... [more]
PKNL_MYCBO4.441e-1138.95Probable serine/threonine-protein kinase pknL OS=M... [more]
IRAK1_MOUSE4.441e-1135.29Interleukin-1 receptor-associated kinase 1 OS=Mus ... [more]
GDT4_DICDI4.441e-1135.85Probable serine/threonine-protein kinase gdt4 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC05803C02SK FerrChloL1 Citrus clementina cDNA clone C05803C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296823 ID=CX296823; Name=CX296823; organism=Citrus clementina; type=EST; length=381bp
TGTAGAAGTTTCAGGTGCTCTTTTCTACTTGCATTCAGCTGCTTCCATCC
CTATTTATCATCGAGACATCAAGTCCGCAAACATACTTTTGGACGATAAA
TATCGAGCCAAAGTTTCGGATTTTGGAACTTCAAGATCTGTTATGGTTGA
TCAAACTCATTTGACCACAAAAGTTCAAGGAACTTTTGGATACGTAGATC
CAGAGTATTTTCAGTCAAGTCAATTCACTGAAAAAAGTGATGTTTATAGT
TTTGGAGTAGTTCTTGTTGAGATTTTAACTGGACAGAAACCTATTCGTGC
AATCAACACTGATGAAGACAAAAGTTTAGTGGGATATTTTCTCCAAGCAA
TTAACGAGAACCGTTTGTTTGAAGCCCTTGA
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