CX296823

Overview
NameCX296823
Unique NameCX296823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.125e-21
Identity = 47/118 (39.83%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   20 LFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQK--PIRAINTDEDKSLVGYFLQAINENRL 367
            L YLH      I HRD+K+ANILLD+++ A V DFG +R +    TH+TT V+GT G++ PEY  + + +EK+DV+ +G++L+E++TGQ+   +  +  D+D  L+ +    + E +L
Sbjct:  417 LSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLARLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKL 534          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.125e-21
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 2
Query:    2 VEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGY 337
            ++++ AL YLH      + HRD+K +NILLDD   A +SDFG +R +   +TH TT V GTFGYV PEY  + + ++K+DVYS+GVVL+E+L+ +K +       D S V Y
Sbjct:  975 LDIARALAYLHDQCVPRVLHRDVKPSNILLDDDCNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKAL-------DPSFVSY 1079          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: CRK33_ARATH (Putative cysteine-rich receptor-like protein kinase 33 OS=Arabidopsis thaliana GN=CRK33 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.125e-21
Identity = 53/114 (46.49%), Postives = 75/114 (65.79%), Query Frame = 2
Query:    2 VEVSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTK-VQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDED-KSLVGY 337
            V  +  + YLH  + + I HRD+K++NILLD +   KV+DFG +R   VDQ+   T+ V GT GY+ PEY    QF+ KSDVYSFGV+++EI++G++      TDE  K+LV Y
Sbjct:  425 VGTARGILYLHHDSPLKIIHRDLKASNILLDAEMEPKVADFGMARIFRVDQSRADTRRVVGTHGYISPEYLMHGQFSVKSDVYSFGVLVLEIISGKRNSNFHETDESGKNLVTY 538          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: Y1571_ARATH (Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 51/122 (41.80%), Postives = 79/122 (64.75%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGYFLQAINENRLFE 373
            V+ AL Y+H     PI HRDI S NILLD+ Y AK+SDFGT++ +  D ++ +  V GT+GYV PE+  + + TEK DVYSFGV+++E++ G+ P   +++          L++I++ R+ E
Sbjct:  962 VAHALSYMHHDRITPIVHRDISSGNILLDNDYTAKISDFGTAKLLKTDSSNWSA-VAGTYGYVAPEFAYTMKVTEKCDVYSFGVLILELIIGKHPGDLVSSLSSSPGEALSLRSISDERVLE 1082          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTT-KVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDEDKSLVGYFLQAINENRLFE 373
            V+  L YLH  +   I HRD+K +NILLD     K+SDFG +R    D+T   T KV GT+GY+ PEY     F+EKSDV+SFGV+++EI++G+K     N D +  L+ Y      E R  E
Sbjct:  634 VARGLLYLHQDSRFRIIHRDLKVSNILLDKNMIPKISDFGMARIFERDETEANTMKVVGTYGYMSPEYAMYGIFSEKSDVFSFGVIVLEIVSGKKNRGFYNLDYENDLLSYVWSRWKEGRALE 756          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 42/88 (47.73%), Postives = 66/88 (75.00%), Query Frame = 2
Query:   26 YLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQK 289
            YLH  +++ I HRDIK +NILL+D +  +++DFG +R    D+TH++T + GT GY+ PEY    + TEK+DVYSFGV+++E++TG++
Sbjct:  435 YLHEESNLRIIHRDIKLSNILLEDDFTPRIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLMIEVITGKR 522          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: CRK31_ARATH (Putative cysteine-rich receptor-like protein kinase 31 OS=Arabidopsis thaliana GN=CRK31 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTH-LTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQK 289
            V+  L YLH  + + I HRDIK++NILLD     K++DFG +R+  VDQT   T +V GTFGY+ PEY    QF+ KSDVYSFGV+++EI+ G+K
Sbjct:  445 VTRGLLYLHQDSRLTIIHRDIKASNILLDADMNPKIADFGMARNFRVDQTEDQTGRVVGTFGYMPPEYVTHGQFSTKSDVYSFGVLILEIVCGKK 539          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.775e-21
Identity = 50/122 (40.98%), Postives = 80/122 (65.57%), Query Frame = 2
Query:   20 LFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQK--PIRAINTDEDKSLVGYFLQAINENRLFEAL 379
            L YLH      I HRD+K+ANILLD+++ A V DFG ++ +    TH+TT V+GT G++ PEY  + + +EK+DV+ +GV+L+E++TGQ+   +  +  D+D  L+ +    + E +L EAL
Sbjct:  401 LAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKL-EAL 521          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: CRK32_ARATH (Putative cysteine-rich receptor-like protein kinase 32 OS=Arabidopsis thaliana GN=CRK32 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.624e-21
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTHLTTK-VQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQK 289
            ++  L YLH  + + I HRDIK++NILLD     K++DFG +R+  VDQT   T+ V GTFGY+ PEY    QF+ KSDVYSFGV+++EI+ G+K
Sbjct:  435 ITRGLLYLHQDSRLTIIHRDIKASNILLDADMNPKIADFGMARNFRVDQTEDNTRRVVGTFGYMPPEYVTHGQFSTKSDVYSFGVLILEIVCGKK 529          
BLAST of CX296823 vs. ExPASy Swiss-Prot
Match: CRK19_ARATH (Cysteine-rich receptor-like protein kinase 19 OS=Arabidopsis thaliana GN=CRK19 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.624e-21
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 2
Query:    8 VSGALFYLHSAASIPIYHRDIKSANILLDDKYRAKVSDFGTSRSVMVDQTH-LTTKVQGTFGYVDPEYFQSSQFTEKSDVYSFGVVLVEILTGQKPIRAINTDE 316
            ++  + YLH  + + I HRD+K+ NILLDD    K++DFG +R   +DQT  +T +V GT+GY+ PEY    QF+ KSDVYSFGV+++EI++G K       DE
Sbjct:  432 IARGILYLHQDSRLTIIHRDLKAGNILLDDDMNPKIADFGMARIFGMDQTEAMTRRVVGTYGYMSPEYAMYGQFSMKSDVYSFGVLVLEIISGMKNSSLYQMDE 535          
The following BLAST results are available for this feature:
BLAST of CX296823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
SERK2_ARATH2.125e-2139.83Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
RPK2_ARATH2.125e-2145.54LRR receptor-like serine/threonine-protein kinase ... [more]
CRK33_ARATH2.125e-2146.49Putative cysteine-rich receptor-like protein kinas... [more]
Y1571_ARATH2.775e-2141.80Probable leucine-rich repeat receptor-like protein... [more]
SRK6_BRAOE2.775e-2143.90Putative serine/threonine-protein kinase receptor ... [more]
CRK3_ARATH2.775e-2147.73Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]
CRK31_ARATH2.775e-2152.63Putative cysteine-rich receptor-like protein kinas... [more]
BAK1_ARATH2.775e-2140.98BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
CRK32_ARATH3.624e-2151.58Putative cysteine-rich receptor-like protein kinas... [more]
CRK19_ARATH3.624e-2146.15Cysteine-rich receptor-like protein kinase 19 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05803C02SK FerrChloL1 Citrus clementina cDNA clone C05803C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296823 ID=CX296823; Name=CX296823; organism=Citrus clementina; type=EST; length=381bp
TGTAGAAGTTTCAGGTGCTCTTTTCTACTTGCATTCAGCTGCTTCCATCC
CTATTTATCATCGAGACATCAAGTCCGCAAACATACTTTTGGACGATAAA
TATCGAGCCAAAGTTTCGGATTTTGGAACTTCAAGATCTGTTATGGTTGA
TCAAACTCATTTGACCACAAAAGTTCAAGGAACTTTTGGATACGTAGATC
CAGAGTATTTTCAGTCAAGTCAATTCACTGAAAAAAGTGATGTTTATAGT
TTTGGAGTAGTTCTTGTTGAGATTTTAACTGGACAGAAACCTATTCGTGC
AATCAACACTGATGAAGACAAAAGTTTAGTGGGATATTTTCTCCAAGCAA
TTAACGAGAACCGTTTGTTTGAAGCCCTTGA
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